Browse Element(s) Details


Os.5671.1.S1_at

Description gb:AK071857.1
DB_XREF= gi:32981880
TID=Os.5671.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118I21, full insert sequence.
FL= gb:AK071857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3386011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5671.1.S1_at--193--5791Chr08:21066391..21066414 (24 bp)
GACGACGCTTCTTCAATGTTTTTGC
LOC_Os08g33860
Os.5671.1.S1_at--21--10731Chr08:21066508..21066530 (23 bp)
TTGCTTTTTCTACTACGAGTCACCG
LOC_Os08g33860
Os.5671.1.S1_at--693--3591Chr08:21066543..21066567 (25 bp)
CATTCTACATCATGGCTTGGGCAAT
LOC_Os08g33860
Os.5671.1.S1_at--289--9931Chr08:21066850..21066874 (25 bp)
TAGCGGCTGCTCTAGCTGCAACTGA
LOC_Os08g33860
Os.5671.1.S1_at--407--8291Chr08:21066878..21066902 (25 bp)
GGCATTCATTCTACAGTCAGGACAA
LOC_Os08g33860
Os.5671.1.S1_at--968--7591Chr08:21066908..21066932 (25 bp)
GGGCATGAATTTCACCATCGCACCA
LOC_Os08g33860
Os.5671.1.S1_at--563--1531Chr08:21066952..21066976 (25 bp)
AGCATGAGCCTATCCCTTGAATTAA
LOC_Os08g33860
Os.5671.1.S1_at--347--7751Chr08:21067145..21067169 (25 bp)
GGTGTCTGTGATACTGAAGCCCCTT
LOC_Os08g33860
Os.5671.1.S1_at--981--5411Chr08:21067160..21067184 (25 bp)
GAAGCCCCTTTTTTATGTATGTATG
LOC_Os08g33860
Os.5671.1.S1_at--267--10611Chr08:21067192..21067216 (25 bp)
TTCTGTGTTCAGTGTCCTGCGTATA
LOC_Os08g33860
Os.5671.1.S1_at--339--9731Chr08:21067245..21067269 (25 bp)
TAGGTTCCTAATTTTTGTCTCCCAG
LOC_Os08g33860
Target Sequence 
GACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTACATCATGGCTTGGGC
AATCAATATCTTACAGGGCCGNANNNNNNNNNNNGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGT
CAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATT
AATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATT
NATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGT
GTGTGTAANAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTA
TAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis