Browse Element(s) Details


Os.53506.1.S1_at

Description gb:AK073013.1
DB_XREF= gi:32983036
TID=Os.53506.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000B16, full insert sequence.
FL= gb:AK073013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3391011/11NAC-domain containing protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33929NANA8+21103001..21103731NA
LOC_Os08g33940OsAffx.30006.2.S1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g33940Os.27085.1.A1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53506.1.S1_at--63--9371Chr08:21086830..21086854 (25 bp)
TCGACACGCAGTTTGGGCAGCCTGA
LOC_Os08g33910
Os.53506.1.S1_at--648--8251Chr08:21086845..21086869 (25 bp)
GGCAGCCTGACCAGATCAGCAGATT
LOC_Os08g33910
Os.53506.1.S1_at--191--6531Chr08:21086866..21086890 (25 bp)
GATTTGTGGTCGATTCATCTGTAAA
LOC_Os08g33910
Os.53506.1.S1_at--484--2771Chr08:21086916..21086940 (25 bp)
AAGAGCCAAGATCCATCAGCAAGAA
LOC_Os08g33910
Os.53506.1.S1_at--1036--4471Chr08:21086942..21086966 (25 bp)
GCCTGGCAGTGGCTTCAGCATGAAC
LOC_Os08g33910
Os.53506.1.S1_at--501--7471Chr08:21086980..21087004 (25 bp)
GTGTGGCAAGAATCAACTTCCCGTT
LOC_Os08g33910
Os.53506.1.S1_at--760--2511Chr08:21086994..21087018 (25 bp)
AACTTCCCGTTCGATTTAGGAGCAG
LOC_Os08g33910
Os.53506.1.S1_at--47--5951Chr08:21087038..21087062 (25 bp)
GAGCAGCATACCTTGGGAATCCTTC
LOC_Os08g33910
Os.53506.1.S1_at--213--2031Chr08:21087072..21087096 (25 bp)
ACTACTGTCCATGCTGAGATGCCAA
LOC_Os08g33910
Os.53506.1.S1_at--919--6091Chr08:21087167..21087191 (25 bp)
GAGTCACCTTCATCTGTTAGCATTT
LOC_Os08g33910
Os.53506.1.S1_at--130--10391Chr08:21087329..21087353 (25 bp)
TTTTCGAGTTTCTGAGTGCTGTGAG
LOC_Os08g33910
Target Sequence 
TCGACACGCAGTTTGGGCAGCCTGACCAGATCAGCAGATTTGTGGTCGATTCATCTGTAAATGCAAATGGAGGAGGCATC
AGCAACAAGAGCCAAGATCCATCAGCAAGAAAGCCTGGCAGTGGCTTCAGCATGAACAGTGACTGGGATGGTGTGGCAAG
AATCAACTTCCCGTTCGATTTAGGAGCAGATTCTTCAGAAGATTGGAGGAGCAGCATACCTTGGGAATCCTTCCTTAGCC
CAACTACTGTCCATGCTGAGATGCCAAACTAGCTGCAGAGGAATGCCAGGGGTGTTGTTACTAATATTATTCAGAGATAT
AGATGTACAAATACAGTGAGTCACCTTCATCTGTTAGCATTTCTGTTAGCAACAAAAAAAAAAAAGGTATTGTTTCTTCA
GTTTTGATTAGATGTACTGTACATACTGTGAGATATAGGAGTACTTGTTAACAGCAAAGCTAACAGAGAGAAGGTTACTT
TGGTTGTGTTGTACATACATTTTCGAGTTTCTGAGTGCTGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis