Browse Element(s) Details


OsAffx.30006.2.S1_at

Description tigr:9636.m03403
TID=OsAffx.30006.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3394011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33929NANA8+21103001..21103731NA
LOC_Os08g33940OsAffx.30006.2.S1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g33940Os.27085.1.A1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g33950NANA8+21123512..21129486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33960Os.57503.1.A1_at1/118+21132242..21132972hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30006.2.S1_at--25--4711Chr08:21108806..21108830 (25 bp)
GCGGCGACGTCGTACGCATCCAGCG
LOC_Os08g33940
OsAffx.30006.2.S1_at--1126--5751Chr08:21108811..21108835 (25 bp)
GACGTCGTACGCATCCAGCGCCGAG
LOC_Os08g33940
OsAffx.30006.2.S1_at--206--9391Chr08:21108815..21108839 (25 bp)
TCGTACGCATCCAGCGCCGAGAACA
LOC_Os08g33940
OsAffx.30006.2.S1_at--161--4571Chr08:21108828..21108852 (25 bp)
GCGCCGAGAACATCGCGCGGCTCCT
LOC_Os08g33940
OsAffx.30006.2.S1_at--228--5751Chr08:21108986..21109010 (25 bp)
GACGGCTCGACGGTCACCAGCAAGA
LOC_Os08g33940
OsAffx.30006.2.S1_at--639--8311Chr08:21108989..21109013 (25 bp)
GGCTCGACGGTCACCAGCAAGACGA
LOC_Os08g33940
OsAffx.30006.2.S1_at--140--4811Chr08:21108990..21109014 (25 bp)
GCTCGACGGTCACCAGCAAGACGAA
LOC_Os08g33940
OsAffx.30006.2.S1_at--871--9351Chr08:21108992..21109016 (25 bp)
TCGACGGTCACCAGCAAGACGAAGG
LOC_Os08g33940
OsAffx.30006.2.S1_at--1051--5731Chr08:21108994..21109018 (25 bp)
GACGGTCACCAGCAAGACGAAGGAC
LOC_Os08g33940
OsAffx.30006.2.S1_at--787--9671Chr08:21108999..21109023 (25 bp)
TCACCAGCAAGACGAAGGACGAGGA
LOC_Os08g33940
OsAffx.30006.2.S1_at--148--1851Chr08:21109010..21109034 (25 bp)
ACGAAGGACGAGGAGACCGCCGGCG
LOC_Os08g33940
Target Sequence 
GCGGCGACGTCGTACGCATCCAGCGCCGAGAACATCGCGCGGCTCCTGGAGGGCTGGATGCGCCCCGGCGGCGGCGGCGG
CAAGACGACGACGACGCCGTCCTCCGGGTCGAGGTCGTCGGCGGCGTCGGTGCTGTCCGGGGAGGCCAGCCACAGCGGCG
GCGCCACGGCGCCGACGCCCGACGGCTCGACGGTCACCAGCAAGACGAAGGACGAGGAGACCGCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30006.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis