Browse Element(s) Details


Os.57503.1.A1_at

Description gb:AF216531.1
DB_XREF= gi:6942014
TID=Os.57503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57503 (NCBI UniGene Cluster)
UG_TITLE=Extensin-like proline-rich protein RiP-5 mRNA, partial cds
DEF=Oryza sativa extensin-like proline-rich protein RiP-5 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g056507/11expressed protein
LOC_Os08g339601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57503.1.A1_at--111--5911NONE
GAGTGAGGACTAGGGTTTACAATGT
NONE
Os.57503.1.A1_at--694--10471NONE
TTACAATGTCTTGGGCTTAGGCCTT
NONE
Os.57503.1.A1_at--931--8631Chr03:2798916..2798940 (25 bp)
TGGGCTTAGGCCTTTTTGTTGTATT
LOC_Os03g05650
Os.57503.1.A1_at--31--8651Chr03:2798948..2798972 (25 bp)
TGGGCTGTTATGAGTCTAGCTCGTT
LOC_Os03g05650
Os.57503.1.A1_at--884--6092Chr08:21132706..21132726 (21 bp)
GAGTCTAGCTCGTTAAGGCTTGCGA
LOC_Os08g33960
Os.57503.1.A1_at--1002--15511Chr12:25247651..25247675 (25 bp)
AGCTCGGCTCGTTAGAAAATTCAAA
NONE
Os.57503.1.A1_at--851--1551NONE
AGCTTTCTGTCCACCTTATACTCGA
NONE
Os.57503.1.A1_at--9--5851Chr03:2799123..2799146 (24 bp)
GACCTTCAGTCCTTCAGACAATGCG
LOC_Os03g05650
Os.57503.1.A1_at--156--10531Chr03:2799134..2799158 (25 bp)
TTCAGACAATGCGTTAGGGACACAT
LOC_Os03g05650
Os.57503.1.A1_at--319--5631Chr03:2799152..2799176 (25 bp)
GACACATTTGTGAGTTATCAACATG
LOC_Os03g05650
Os.57503.1.A1_at--741--611Chr03:2799178..2799202 (25 bp)
ATGCGATGCCATAAGATTAGTCAAA
LOC_Os03g05650
Target Sequence 
GAGTGAGGACTAGGGTTTACAATGTCTTGGGCTTAGGCCTTTTTGTTGTATTGGGCTTTTGGGCTGTTATGAGTCTAGCT
CGTTAAGGCTTGCGAGCCAGCTCGAGCTGGCTCGTTATCTCTAACGAGCTAAAATGTTAGCTCGGCTCGTTAGAAAATTC
AAACGAGCCGAGCAGAGCCTGTCACAAGCCGAGCGAGCTAACGAGTCACGAGCTTTCTGTCCACCTTATACTCGACCTTC
AGTCCTTCAGACAATGCGTTAGGGACACATTTGTGAGTTATCAACATGTATGCGATGCCATAAGATTAGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57503.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis