Browse Element(s) Details


Os.38983.1.S1_at

Description gb:AY339376.1
DB_XREF= gi:33440019
TID=Os.38983.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38983 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Ap23 mRNA, complete cds.
PROD=Ap23
FL= gb:AY339376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0559011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38983.1.S1_at--294--9711Chr03:2779654..2779678 (25 bp)
TCAACTTCCCGGGAGATCATCATCA
LOC_Os03g05590
Os.38983.1.S1_at--447--1951Chr03:2779678..2779702 (25 bp)
ACGGCGCCGCAAGCAGGATGACCAG
LOC_Os03g05590
Os.38983.1.S1_at--728--991Chr03:2779692..2779716 (25 bp)
AGGATGACCAGCACCGGCTCTTCTT
LOC_Os03g05590
Os.38983.1.S1_at--428--1591Chr03:2779801..2779825 (25 bp)
AGCTGGAGTGCCTCGACGACAAGGT
LOC_Os03g05590
Os.38983.1.S1_at--564--3791Chr03:2779839..2779863 (25 bp)
CTCGCGGAGACCAACTATCGTGATA
LOC_Os03g05590
Os.38983.1.S1_at--352--1571Chr03:2779881..2779905 (25 bp)
AGCTACTATGGCTACTTAGCTAGTA
LOC_Os03g05590
Os.38983.1.S1_at--73--10011Chr03:2779897..2779921 (25 bp)
TAGCTAGTACATACCGATCCGTCGG
LOC_Os03g05590
Os.38983.1.S1_at--1061--2111Chr03:2779936..2779960 (25 bp)
ACATGGAGCAGTCGTGATCTCGTCT
LOC_Os03g05590
Os.38983.1.S1_at--196--471Chr03:2779952..2779976 (25 bp)
ATCTCGTCTGTATGCGCTCCTTGAA
LOC_Os03g05590
Os.38983.1.S1_at--449--611Chr03:2779963..2779987 (25 bp)
ATGCGCTCCTTGAAACGATCGAGAC
LOC_Os03g05590
Os.38983.1.S1_at--491--6391Chr03:2779979..2780003 (25 bp)
GATCGAGACCATGAGCTTGCTAGCT
LOC_Os03g05590
Target Sequence 
TCAACTTCCCGGGAGATCATCATCACGGCGCCGCAAGCAGGATGACCAGCACCGGCTCTTCTTCGTCCTCCTTCACCACG
CCTCCTCCGGCGAACTCCTCCGCGGCGGCGGGCCGCGGCGGCTCCGATCGGACGACGGACAAGGTGGAGCTGGAGTGCCT
CGACGACAAGGTCCTGGAGGACCTCCTCGCGGAGACCAACTATCGTGATAAGAACTACTAGTGATAAGAACTACTAGCTA
GCTAGCTACTATGGCTACTTAGCTAGTACATACCGATCCGTCGGTATTAGCAAGACGGACATGGAGCAGTCGTGATCTCG
TCTGTATGCGCTCCTTGAAACGATCGAGACCATGAGCTTGCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis