Browse Element(s) Details


Os.57546.1.S1_x_at

Description gb:AF259978.1
DB_XREF= gi:10304083
TID=Os.57546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57546 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica cultivar Jingxi 17 phosphate transporter PTs1 pseudogene, partial sequence
DEF=Oryza sativa subsp. japonica cultivar Jingxi 17 phosphate transporter PTs1 pseudogene, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g056204/11phosphate:H+ symporter family protein, expressed
LOC_Os03g056402/11phosphate:H+ symporter family protein, expressed
LOC_Os04g106901/11phosphate:H+ symporter family protein, expressed
LOC_Os03g056101/11phosphate transporter HvPT5, putative, expressed
LOC_Os04g107501/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57546.1.S1_x_at--474--9931NONE
TACTGGCGGATAAAGATGCCCAAAA
NONE
Os.57546.1.S1_x_at--162--4591NONE
GCGAAACAAACAACGGCCGACATGT
NONE
Os.57546.1.S1_x_at--733--771NONE
ATGTCCAAGGTGCTGCACACCCAAA
NONE
Os.57546.1.S1_x_at--581--10571NONE
TTCTACGGCCAAAAACCTGTTCCAG
NONE
Os.57546.1.S1_x_at--945--9551Chr03:2787602..2787626 (25 bp)
TCTTCAGCAAGGTCGGGTGGATCCC
LOC_Os03g05620
Os.57546.1.S1_x_at--437--4112Chr03:2795418..2795442 (25 bp)
CGAAGACCATGAACGCGCTCGAGGA
LOC_Os03g05640
Os.57546.1.S1_x_at--799--10511NONE
TTCACCATCGCATTCATCAGGATCA
NONE
Os.57546.1.S1_x_at--800--9631NONE
TCAGGATCATAAACAGGTTCTGGAT
NONE
Os.57546.1.S1_x_at--318--8572Chr03:2787447..2787471 (25 bp)
TGGATCCAGATCATGGGCTTCGCCA
LOC_Os03g05620
Os.57546.1.S1_x_at--391--8631NONE
TGGGCTTCGCCATAATGACGGCGTT
NONE
Os.57546.1.S1_x_at--426--2995Chr04:5828582..5828605 (24 bp)
AATGACGGCGTTCATGCTCGGCCTC
LOC_Os04g10750
Target Sequence 
TACTGGCGGATAAAGATGCCCAAAACGGCGCGGTACACGGCGCTCATCGCCCGCAACGCGAAACAAACAACGGCCGACAT
GTCCAAGGTGCTGCACACCCAAATTGAGGAGAGCGCGAACCGCGCCGAGACGGTGGCCGTCGGCGACGAGAGCTGGGGCC
TCTTCTCGCGCCAGTTCCTGCGCCGCCACAGCCTCCACCTCCTCGCCACCACCAACACGTGGTTCCTCCTCAACATCGCC
TTCTACGGCCAAAAACCTGTTCCAGAAAAACATCTTCAGCAAGGTCGGGTGGATCCCGCCAGCGAAGACCATGAACGCGC
TCGAGGAGCTCTACCGCATCACCCGCGCCCAGACGCTCATCGCGCTCTGCGGCACCATCCCGGGCTACTGGTTCACCATC
GCATTCATCAGGATCATAAACAGGTTCTGGATCCAGATCATGGGCTTCGCCATAATGACGGCGTTCATGCTCGGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57546.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis