Browse Element(s) Details


Os.49567.1.S1_at

Description gb:AK099979.1
DB_XREF= gi:32985188
TID=Os.49567.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129C24, full insert sequence.
FL= gb:AK099979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g056603/11Appr-1-p processing enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49567.1.S1_at--103--31Chr03:2802773..2802797 (25 bp)
ATTGGCTTTGCAGCTTTTCGTTGAT
LOC_Os03g05660
Os.49567.1.S1_at--172--5071Chr03:2802612..2802636 (25 bp)
GCAGCTGTTCAGATACGTACCACGT
LOC_Os03g05660
Os.49567.1.S1_at--403--171Chr03:2802488..2802592 (25 bp)
ATTTTGTCTTCCAGCATGATCTCGA
LOC_Os03g05660
Os.49567.1.S1_at--499--1351Chr03:2802372..2802396 (25 bp)
AGAGATCCTCCAATACCACACTGTA
NONE
Os.49567.1.S1_at--426--9851Chr03:2802349..2802373 (25 bp)
TACAATCTCTTTGCCCTCTATAGAA
NONE
Os.49567.1.S1_at--1138--5011Chr03:2802281..2802305 (25 bp)
GCAGTGTTTTGTAGCCTTCTAGTCT
NONE
Os.49567.1.S1_at--608--9971Chr03:2802270..2802294 (25 bp)
TAGCCTTCTAGTCTTTTCTTTCTGT
NONE
Os.49567.1.S1_at--819--2411Chr03:2802193..2802217 (25 bp)
AAAAAATGCTGTGGCCGTCTCAAAT
NONE
Os.49567.1.S1_at--857--7151Chr03:2802177..2802201 (25 bp)
GTCTCAAATTCTCCAGCTAGGCTGG
NONE
Os.49567.1.S1_at--706--8451Chr03:2802155..2802179 (25 bp)
TGGCCTCTTGGGTGCTGTGTAATTC
NONE
Os.49567.1.S1_at--1041--8731Chr03:2802138..2802162 (25 bp)
TGTAATTCTGGCTGGTCTTTGCAAT
NONE
Target Sequence 
ATTGGCTTTGCAGCTTTTCGTTGATGGGGAGGTCTGGAAGAAAGTTATCTATGTCGACAGACTTGTGCAGCTGTTCAGAT
ACGTACCACGTGAACAACTGACAATTCCTGATTTTGTCTTCCAGCATGATCTCGAAGTGAATGGTGGAAAGGGCATAATA
ATTGACCCTAGAACANAGCATGTCTACCAAAGACCATCAGGTTGATAAATATAGCCTGCTATATGCAGAGATCCTCCAAT
ACCACACTGTACAATCTCTTTGCCCTCTATAGAAGATTTTCCTTCTTGATCTGTGCATTTTGTATCTAGTTGAGTTGGCA
GTGTTTTGTAGCCTTCTAGTCTTTTCTTTCTGTTCTGTCAGGGAAGCGTAGATTATTATGTATATGTATCGCTCNANANA
ATAATAAAAAATGCTGTGGCCGTCTCAAATTCTCCAGCTAGGCTGGCCTCTTGGGTGCTGTGTAATTCTGGCTGGTCTTT
GCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis