Browse Element(s) Details

Os.57046.1.S1_s_at

Description

gb:AK110807.1
DB_XREF= gi:32996016
TID=Os.57046.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F01, full insert sequence.
FL= gb:AK110807.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g05690	11/11	Zinc finger, C2H2 type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g05630	Os.54405.1.S1_at	2/11	3	+	2790889..2793111	expressed protein
LOC_Os03g05640	Os.5086.1.S1_at	10/11	3	+	2794550..2796478	phosphate:H+ symporter family protein, expressed
LOC_Os03g05640	Os.57546.1.S1_x_at	2/11	3	+	2794550..2796478	phosphate:H+ symporter family protein, expressed
LOC_Os03g05640	Os.46784.1.S1_x_at	1/11	3	+	2794550..2796478	phosphate:H+ symporter family protein, expressed
LOC_Os03g05650	Os.57503.1.A1_at	7/11	3	+	2798108..2799229	expressed protein
LOC_Os03g05660	Os.49567.1.S1_at	3/11	3	+	2802418..2807057	Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660	OsAffx.25937.1.S1_at	1/11	3	+	2802418..2807057	Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670	Os.47130.4.A1_x_at	2/11	3	+	2810854..2811177	retrotransposon protein, putative, unclassified
LOC_Os03g05680	Os.57105.1.S1_x_at	11/11	3	+	2812244..2816379	jmjC domain containing protein, expressed
LOC_Os03g05690	Os.57046.1.S1_s_at	11/11	3	+	2817883..2820800	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690	Os.9018.1.S1_at	11/11	3	+	2817883..2820800	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700	Os.56054.1.S1_at	11/11	3	+	2820901..2821502	expressed protein
LOC_Os03g05710	Os.7568.1.S1_a_at	11/11	3	+	2822968..2823937	GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720	Os.9622.1.S1_at	11/11	3	+	2824838..2830793	phage head-tail adaptor family protein, expressed
LOC_Os03g05730	Os.4689.1.S1_at	11/11	3	+	2831406..2835792	Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740	Os.4190.1.S1_at	11/11	3	+	2836239..2839339	Ras-related protein RHN1, putative, expressed
LOC_Os03g05740	Os.48663.1.A1_s_at	11/11	3	+	2836239..2839339	Ras-related protein RHN1, putative, expressed
LOC_Os03g05750	Os.49591.1.S1_at	9/11	3	+	2845490..2847256	heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57046.1.S1_s_at--241--313	1	Chr03:2820088..2820112 (25 bp)	AATTTTGTGACATGACATTTGAGAC	LOC_Os03g05690
Os.57046.1.S1_s_at--320--269	1	Chr03:2820115..2820139 (25 bp)	AAGCTGAACTTCGTGCTCACCAACG	LOC_Os03g05690
Os.57046.1.S1_s_at--16--1063	1	Chr03:2820124..2820148 (25 bp)	TTCGTGCTCACCAACGCAATATCTG	LOC_Os03g05690
Os.57046.1.S1_s_at--785--325	1	Chr03:2820135..2820159 (25 bp)	CAACGCAATATCTGCACCGACGAGT	LOC_Os03g05690
Os.57046.1.S1_s_at--995--23	1	Chr03:2820142..2820166 (25 bp)	ATATCTGCACCGACGAGTCTTGTGG	LOC_Os03g05690
Os.57046.1.S1_s_at--518--903	1	Chr03:2820147..2820171 (25 bp)	TGCACCGACGAGTCTTGTGGCAAGC	LOC_Os03g05690
Os.57046.1.S1_s_at--738--577	1	Chr03:2820153..2820177 (25 bp)	GACGAGTCTTGTGGCAAGCGCTTCA	LOC_Os03g05690
Os.57046.1.S1_s_at--14--117	1	Chr03:2820157..2820181 (25 bp)	AGTCTTGTGGCAAGCGCTTCAGCTC	LOC_Os03g05690
Os.57046.1.S1_s_at--1040--515	1	Chr03:2820166..2820190 (25 bp)	GCAAGCGCTTCAGCTCTCACAAATA	LOC_Os03g05690
Os.57046.1.S1_s_at--1118--489	1	Chr03:2820172..2820196 (25 bp)	GCTTCAGCTCTCACAAATACCTGAA	LOC_Os03g05690
Os.57046.1.S1_s_at--554--889	1	Chr03:2820221..2820245 (25 bp)	TGAGAGGCCATTCAAATGCCCCTGG	LOC_Os03g05690

Target Sequence

AATTTTGTGACATGACATTTGAGACTAAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGC
AAGCGCTTCAGCTCTCACAAATACCTGAAGCNTCATCAGTGTGTACACAGAGATGAGAGGCCATTCAAATGCCCCTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis