Browse Element(s) Details


Os.48663.1.A1_s_at

Description gb:CR286706
DB_XREF= gi:44673272
DB_XREF=CR286706
CLONE=y697h03p3
TID=Os.48663.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48663 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567008.1 (A.thaliana) small GTP-binding protein - like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0574011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48663.1.A1_s_at--209--2491Chr03:2837496..2837520 (25 bp)
AACATGGTAGTCCTGATATTATCAT
LOC_Os03g05740
Os.48663.1.A1_s_at--331--3051Chr03:2837440..2837461 (22 bp)
AATCGACATGTATCTTCTCAGGAAG
LOC_Os03g05740
Os.48663.1.A1_s_at--731--3491Chr03:2836531..2836555 (25 bp)
CAGGCCAACGGCGTCTTGATAATTA
LOC_Os03g05740
Os.48663.1.A1_s_at--74--7151Chr03:2836519..2836543 (25 bp)
GTCTTGATAATTAGCTTCGGTGTTT
LOC_Os03g05740
Os.48663.1.A1_s_at--272--5331Chr03:2836491..2836515 (25 bp)
GAAGTGGAACACATACAAGCTGGTA
LOC_Os03g05740
Os.48663.1.A1_s_at--662--4991Chr03:2836462..2836486 (25 bp)
GCATGTAACATGTCTGTCAGGGCAA
LOC_Os03g05740
Os.48663.1.A1_s_at--1082--7171Chr03:2836451..2836475 (25 bp)
GTCTGTCAGGGCAAAAACTGCTGTA
LOC_Os03g05740
Os.48663.1.A1_s_at--63--1991Chr03:2836435..2836459 (25 bp)
ACTGCTGTATGGTCGATTGTTTGGA
LOC_Os03g05740
Os.48663.1.A1_s_at--282--3451Chr03:2836393..2836417 (25 bp)
CAGTTTATCCCATTGTGTTCAATCG
LOC_Os03g05740
Os.48663.1.A1_s_at--388--10191Chr03:2836358..2836382 (25 bp)
TATATGTTAATAGTGCCGTCGTGTA
LOC_Os03g05740
Os.48663.1.A1_s_at--215--7291Chr03:2836346..2836370 (25 bp)
GTGCCGTCGTGTAACATCTTAGTTT
LOC_Os03g05740
Target Sequence 
AACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAANCTGATCTACATGAAAATCGACATGTATCTTCTCAG
GAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGT
ATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACA
TACAAGCTGGTAATGTGCATGTAACATGTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATA
CTGTNCAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTAATAGTGCCGTCGTGTAACATCTTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48663.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis