Browse Element(s) Details


Os.56054.1.S1_at

Description gb:AK109181.1
DB_XREF= gi:32994390
TID=Os.56054.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A04, full insert sequence.
FL= gb:AK109181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56054.1.S1_at--453--5991Chr03:2821293..2821317 (25 bp)
GAGAGATCCAAGGACCTGTTCCGGC
LOC_Os03g05700
Os.56054.1.S1_at--7--1771Chr03:2821280..2821304 (25 bp)
ACCTGTTCCGGCAGTTCAAGGACGC
LOC_Os03g05700
Os.56054.1.S1_at--292--7671Chr03:2821247..2821271 (25 bp)
GGGATCACTGGGTCTGCCTCAAGAA
LOC_Os03g05700
Os.56054.1.S1_at--621--3491Chr03:2821168..2821192 (25 bp)
CATGTTCGGCGAGCCAAATGTCGGC
LOC_Os03g05700
Os.56054.1.S1_at--144--2991Chr03:2821152..2821176 (25 bp)
AATGTCGGCGACCTCTTGGGAAGAA
LOC_Os03g05700
Os.56054.1.S1_at--530--1451Chr03:2821109..2821133 (25 bp)
AGAAGACGCCTTCCGCGTAAATTAT
LOC_Os03g05700
Os.56054.1.S1_at--56--6951Chr03:2821060..2821084 (25 bp)
GTAGCATTCTTGAGGGCGAACCATC
LOC_Os03g05700
Os.56054.1.S1_at--1089--351Chr03:2821024..2821048 (25 bp)
ATAAGTGTTCTCTCTATGGTTAAAT
LOC_Os03g05700
Os.56054.1.S1_at--443--10031Chr03:2820992..2821016 (25 bp)
TAGTTCGAGTTTTACTCCGTTCGTG
LOC_Os03g05700
Os.56054.1.S1_at--697--1991Chr03:2820979..2821003 (25 bp)
ACTCCGTTCGTGTTGATTAGTCCAG
LOC_Os03g05700
Os.56054.1.S1_at--578--111Chr03:2820964..2820988 (25 bp)
ATTAGTCCAGGCTTTCGAGGTGTAA
LOC_Os03g05700
Target Sequence 
GAGAGATCCAAGGACCTGTTCCGGCAGTTCAAGGACGCGCCGGCGGGGGATCACTGGGTCTGCCTCAAGAACAAGGTCCG
CGCCGCCGGCGAGTACGCCACCCTCCGTACTCGCCAGGGCATCACCATGTTCGGCGAGCCAAATGTCGGCGACCTCTTGG
GAAGAACCAAGGATGACGACTCCAAGAAGACGCCTTCCGCGTAAATTATAGACCAAGATTGAGTGGAGAAGCAGTAGCAT
TCTTGAGGGCGAACCATCTAAGTTTGTTAATAAGTGTTCTCTCTATGGTTAAATGATTGATTAGTTCGAGTTTTACTCCG
TTCGTGTTGATTAGTCCAGGCTTTCGAGGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis