Browse Element(s) Details


Os.46784.1.S1_x_at

Description gb:NM_196724.1
DB_XREF= gi:37534807
TID=Os.46784.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46784 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative inorganic phosphate transporter (OSJNBa0094K20.1), mRNA.
PROD=putative inorganic phosphate transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3077011/11inorganic phosphate transporter, putative, expressed
LOC_Os04g107501/11phosphate:H+ symporter family protein, expressed
LOC_Os04g106901/11phosphate:H+ symporter family protein, expressed
LOC_Os03g056401/11phosphate:H+ symporter family protein, expressed
LOC_Os10g307901/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA
LOC_Os10g30820OsAffx.30617.1.S1_at11/1110+15722780..15723483hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46784.1.S1_x_at--150--4252Chr10:15699480..15699504 (25 bp)
CCGTCGAGGAGGTGTTCCGCATCGC
LOC_Os10g30770
Os.46784.1.S1_x_at--662--711Chr10:15699614..15699638 (25 bp)
ATGATGACCGTCTTCATGCTCGGCC
LOC_Os10g30770
Os.46784.1.S1_x_at--742--7111Chr10:15699692..15699716 (25 bp)
GTCATGTACGGCTTCACCTTCTTCT
LOC_Os10g30770
Os.46784.1.S1_x_at--521--453Chr10:15699764..15699788 (25 bp)
ATCTACCCGGCGAGGCTGCGTTCCA
LOC_Os10g30770
Os.46784.1.S1_x_at--928--911Chr10:15699776..15699800 (25 bp)
AGGCTGCGTTCCACGTGCCACGGCA
LOC_Os10g30770
Os.46784.1.S1_x_at--436--4251Chr10:15699885..15699909 (25 bp)
CCGGGTACAAGCCAGGCATTGGCAT
LOC_Os10g30770
Os.46784.1.S1_x_at--406--2651Chr10:15699893..15699917 (25 bp)
AAGCCAGGCATTGGCATCCGGAACG
LOC_Os10g30770
Os.46784.1.S1_x_at--964--551Chr10:15699908..15699932 (25 bp)
ATCCGGAACGCGCTGTTCGTGCTCG
LOC_Os10g30770
Os.46784.1.S1_x_at--517--8251Chr10:15699935..15699959 (25 bp)
GGCACGAACTTCCTCGGCATGCTCA
LOC_Os10g30770
Os.46784.1.S1_x_at--1146--8251Chr10:15699950..15699974 (25 bp)
GGCATGCTCATGACGCTGCTGGTGC
LOC_Os10g30770
Os.46784.1.S1_x_at--892--9612Chr10:15699957..15699981 (25 bp)
TCATGACGCTGCTGGTGCCGGAGTC
LOC_Os10g30770
Target Sequence 
CCGTCGAGGAGGTGTTCCGCATCGCGCGCGCGCAGGCGCTCATCGCGCTGTGCGGCACCATCCCGGGCTACTGGTTCACC
GTCGCGTTCATCGACGTCGCCGGCCGCTTCGCCATCCAGCTGATGGGGTTCGCCATGATGACCGTCTTCATGCTCGGCCT
CGCCGCGCCGTACCACCACTGGACGACGCCGGGGAACCACACCGGCTTCGTCGTCATGTACGGCTTCACCTTCTTCTTCG
CCAANTTNGGNCCCAANGCCACCACCTTCATCGTGCCGGCGGAGATCTACCCGGCGAGGCTGCGTTCCACGTGCCACGGC
ATCTCGGCGGCGGCGGGGAAGGCCGGCGCCATCGTCGGCGCGTTCGGGTTCCTGTACGCGGCGCAGGACCCGCACAAGCC
GGAGGCCGGGTACAAGCCAGGCATTGGCATCCGGAACGCGCTGTTCGTGCTCGCCGGCACGAACTTCCTCGGCATGCTCA
TGACGCTGCTGGTGCCGGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46784.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis