Browse Element(s) Details

Os.5293.1.S1_at

Description

gb:AK121209.1
DB_XREF= gi:37990832
TID=Os.5293.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0015F09b.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088J18, full insert sequence.
FL= gb:AK121209.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g30750	11/11	appr-1-p processing enzyme family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g30719	OsAffx.18467.1.S1_s_at	11/11	10	+	15668228..15671424	Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719	Os.46487.1.S1_at	11/11	10	+	15668228..15671424	Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740	Os.35344.18.S1_x_at	6/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30740	Os.35344.3.S1_x_at	6/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30740	OsAffx.22940.5.S1_x_at	2/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30750	Os.5293.1.S1_at	11/11	10	+	15687438..15691986	appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750	OsAffx.25182.1.S1_s_at	1/11	10	+	15687438..15691986	appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760	Os.24630.1.A1_at	11/11	10	+	15692353..15695114	pentatricopeptide, putative
LOC_Os10g30770	Os.46784.1.S1_x_at	11/11	10	+	15698468..15700048	inorganic phosphate transporter, putative, expressed
LOC_Os10g30770	Os.46784.2.S1_x_at	7/11	10	+	15698468..15700048	inorganic phosphate transporter, putative, expressed
LOC_Os10g30790	Os.46160.2.S1_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46160.1.S1_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46160.2.S1_x_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46784.2.S1_x_at	3/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46784.1.S1_x_at	1/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30800	OsAffx.5031.1.S1_x_at	11/11	10	+	15711737..15715861	hypothetical protein
LOC_Os10g30800	OsAffx.5031.3.S1_x_at	7/11	10	+	15711737..15715861	hypothetical protein
LOC_Os10g30800	OsAffx.5031.2.S1_x_at	5/11	10	+	15711737..15715861	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5293.1.S1_at--758--597	1	Chr10:15691236..15691260 (25 bp)	GAGAACAGCTATTCTGGCAATGCAG	LOC_Os10g30750
Os.5293.1.S1_at--834--649	1	Chr10:15691399..15691423 (25 bp)	GATAGGCTTGTGCATCTGTTCAGAT	LOC_Os10g30750
Os.5293.1.S1_at--640--803	1	Chr10:15691577..15691601 (25 bp)	GGAGAGGCCTAATTGTTGACCCAAG	LOC_Os10g30750
Os.5293.1.S1_at--1--359	1	Chr10:15691611..15691635 (25 bp)	CATTTATCAGAGACCGTCTGGCTGA	LOC_Os10g30750
Os.5293.1.S1_at--561--779	1	Chr10:15691651..15691675 (25 bp)	GGTCCAAAGCTCTCATTAGTCCTTA	LOC_Os10g30750
Os.5293.1.S1_at--453--1065	1	Chr10:15691696..15691720 (25 bp)	TTCCCTGTACCAGTATTCCTTGTTA	LOC_Os10g30750
Os.5293.1.S1_at--1028--1065	1	Chr10:15691711..15691735 (25 bp)	TTCCTTGTTAATGTTTCCTTTTGCA	LOC_Os10g30750
Os.5293.1.S1_at--182--915	1	Chr10:15691751..15691775 (25 bp)	TGCGTTTTATTCCATTCTTTTGTTC	LOC_Os10g30750
Os.5293.1.S1_at--639--287	1	Chr10:15691835..15691859 (25 bp)	AAGGTGGTGTCTCAGTGTTATTGTA	LOC_Os10g30750
Os.5293.1.S1_at--302--341	1	Chr10:15691863..15691887 (25 bp)	CAGTTCAAGTTTCACCAAGCAGGTT	LOC_Os10g30750
Os.5293.1.S1_at--772--735	1	Chr10:15691892..15691916 (25 bp)	GTGAATGTCATCCTGTATTATCATC	LOC_Os10g30750

Target Sequence

GAGAACAGCTATTCTGGCAATGCAGATGTTTGTTGATGGAGAGGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGC
ATCTGTTCAGATATGTACCACGNGAACAACTAACTATTCCTGATTTTGTCTTTCAGCATGATTTGGAGGTGAACGGTGGG
AGAGGCCTAATTGTTGACCCAAGAACAAAACACATTTATCAGAGACCGTCTGGCTGATGTANATNTTTCTGCGGTCCAAA
GCTCTCATTAGTCCTTACCTCACTGTGCCTTCTGATCTTCCCTGTACCAGTATTCCTTGTTAATGTTTCCTTTTGCATTT
GCATCTAGTTAATGCGTTTTATTCCATTCTTTTGTTCCTCGACCTTTTTGGGAAGGAAAGTTCTGTCTGTATATGTTCAT
TTTGTACAACCAAATAAAGGTGGTGTCTCAGTGTTATTGTAGAACAGTTCAAGTTTCACCAAGCAGGTTAATTGTGAATG
TCATCCTGTATTATCATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis