Browse Element(s) Details


Os.24630.1.A1_at

Description gb:NM_196723.1
DB_XREF= gi:37534805
TID=Os.24630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24630 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative PPR-repeat containing protein (OSJNBb0015F09b.17), mRNA.
PROD=putative PPR-repeat containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3076011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24630.1.A1_at--1085--2531Chr10:15693557..15693581 (25 bp)
AACTCAGTGCACATGTTTGTCGCAA
LOC_Os10g30760
Os.24630.1.A1_at--962--6311Chr10:15693530..15693554 (25 bp)
GATGACACCCATCCAAGATCAGAGG
LOC_Os10g30760
Os.24630.1.A1_at--678--5011Chr10:15693461..15693485 (25 bp)
GCAGGGTATGTTCCTAACACGGATT
LOC_Os10g30760
Os.24630.1.A1_at--808--2471Chr10:15693446..15693470 (25 bp)
AACACGGATTATGTGCTTCTGCATG
LOC_Os10g30760
Os.24630.1.A1_at--407--5971Chr10:15693380..15693404 (25 bp)
GAGAAGATCGCGCTCGCATTTGCAC
LOC_Os10g30760
Os.24630.1.A1_at--57--7931Chr10:15693297..15693321 (25 bp)
GGATTGCCATTCTGCATTCAGATAC
LOC_Os10g30760
Os.24630.1.A1_at--78--9851Chr10:15693275..15693299 (25 bp)
TACATCTCCAAAGTTTTCAAGCGGG
LOC_Os10g30760
Os.24630.1.A1_at--217--3411Chr10:15693213..15693237 (25 bp)
CAGCAGTGGCTCCTGTTCATGTGGA
LOC_Os10g30760
Os.24630.1.A1_at--590--9911Chr10:15692623..15692647 (25 bp)
TACTCCACAGAAGTTATCCCCTTAT
LOC_Os10g30760
Os.24630.1.A1_at--718--9331Chr10:15692556..15692580 (25 bp)
TCGCTATTCAGCTACAGGAGGTTAT
LOC_Os10g30760
Os.24630.1.A1_at--535--991Chr10:15692520..15692544 (25 bp)
AGGATGCTACTCTGTGGACCGCTGA
LOC_Os10g30760
Target Sequence 
AACTCAGTGCACATGTTTGTCGCAAATGATGACACCCATCCAAGATCAGAGGAGATATATAAGAAGTGGGAGGAGATAAG
CATACAGATTAGGAAAGCAGGGTATGTTCCTAACACGGATTATGTGCTTCTGCATGTAGATGAACAAGAGAGGCAGGCAA
AGTTACAGTATCACAGCGAGAAGATCGCGCTCGCATTTGCACTGATCAACATGCCTTTAGGGGCGACCATTCGGATCATG
AAGAATATTAGGATATGCGGGGATTGCCATTCTGCATTCAGATACATCTCCAAAGTTTTCAAGCGGGAGATTGTTGTCAG
GGATACAAACAGATTCCATCATTTCAGCAGTGGCTCCTGTTCATGTGGAGATTACTGTACTCCACAGAAGTTATCCCCTT
ATTTTACTTGTGATCATCATAAGCATCTGGGAAGTGAGGCACAATCGCTATTCAGCTACAGGAGGTTATCGTGGAACGAG
AGGATGCTACTCTGTGGACCGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24630.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis