Browse Element(s) Details

Os.46160.2.S1_at

Description

gb:AK101170.1
DB_XREF= gi:32986379
TID=Os.46160.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphate transporter (OSJNBb0015F09b.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028K24, full insert sequence.
FL= gb:AK101170.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g30790	11/11	phosphate:H+ symporter family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g30740	Os.35344.18.S1_x_at	6/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30740	Os.35344.3.S1_x_at	6/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30740	OsAffx.22940.5.S1_x_at	2/11	10	+	15678546..15684596	transposon protein, putative, Mutator sub-class
LOC_Os10g30750	Os.5293.1.S1_at	11/11	10	+	15687438..15691986	appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750	OsAffx.25182.1.S1_s_at	1/11	10	+	15687438..15691986	appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760	Os.24630.1.A1_at	11/11	10	+	15692353..15695114	pentatricopeptide, putative
LOC_Os10g30770	Os.46784.1.S1_x_at	11/11	10	+	15698468..15700048	inorganic phosphate transporter, putative, expressed
LOC_Os10g30770	Os.46784.2.S1_x_at	7/11	10	+	15698468..15700048	inorganic phosphate transporter, putative, expressed
LOC_Os10g30790	Os.46160.2.S1_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46160.1.S1_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46160.2.S1_x_at	11/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46784.2.S1_x_at	3/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30790	Os.46784.1.S1_x_at	1/11	10	+	15706012..15708840	phosphate:H+ symporter family protein, expressed
LOC_Os10g30800	OsAffx.5031.1.S1_x_at	11/11	10	+	15711737..15715861	hypothetical protein
LOC_Os10g30800	OsAffx.5031.3.S1_x_at	7/11	10	+	15711737..15715861	hypothetical protein
LOC_Os10g30800	OsAffx.5031.2.S1_x_at	5/11	10	+	15711737..15715861	hypothetical protein
LOC_Os10g30809	NA	NA	10	+	15718382..15719258	NA
LOC_Os10g30820	OsAffx.30617.1.S1_at	11/11	10	+	15722780..15723483	hypothetical protein
LOC_Os10g30826	OsAffx.19542.3.S1_x_at	5/11	10	+	15725902..15727677	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30832	NA	NA	10	+	15728699..15729751	retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006817	biological_process	phosphate transport
GO:0016020	cellular_component	membrane
GO:0005315	molecular_function	inorganic phosphate transporter activity
GO:0005351	molecular_function	sugar porter activity
GO:0015114	molecular_function	phosphate transporter activity
GO:0015144	molecular_function	carbohydrate transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46160.2.S1_at--145--1021	1	Chr10:15706934..15706958 (25 bp)	TATTATACTCCTACTTGTGTTTGTC	LOC_Os10g30790
Os.46160.2.S1_at--757--761	1	Chr10:15706898..15706922 (25 bp)	GGGAATCATGAACCCATGATCATGT	LOC_Os10g30790
Os.46160.2.S1_at--809--961	1	Chr10:15706893..15706917 (25 bp)	TCATGAACCCATGATCATGTTTTGT	LOC_Os10g30790
Os.46160.2.S1_at--480--643	1	Chr10:15706881..15706905 (25 bp)	GATCATGTTTTGTTAGGTTAAGAAG	LOC_Os10g30790
Os.46160.2.S1_at--153--559	1	Chr10:15706850..15706874 (25 bp)	GAAATGTGTGTTAAATACTTCAATT	LOC_Os10g30790
Os.46160.2.S1_at--773--307	1	Chr10:15706837..15706861 (25 bp)	AATACTTCAATTATGTAAACTCTGT	LOC_Os10g30790
Os.46160.2.S1_at--191--119	1	Chr10:15706807..15706831 (25 bp)	AGTATTTGGCCACTTGAGGAATAAT	LOC_Os10g30790
Os.46160.2.S1_at--638--21	1	Chr10:15706804..15706828 (25 bp)	ATTTGGCCACTTGAGGAATAATTCT	LOC_Os10g30790
Os.46160.2.S1_at--489--845	1	Chr10:15706801..15706825 (25 bp)	TGGCCACTTGAGGAATAATTCTTGC	LOC_Os10g30790
Os.46160.2.S1_at--25--887	1	Chr10:15706793..15706817 (25 bp)	TGAGGAATAATTCTTGCAGACCAGC	LOC_Os10g30790
Os.46160.2.S1_at--17--21	1	Chr10:15706767..15706791 (25 bp)	ATTTGGCACGAATACATTTTATAAT	LOC_Os10g30790

Target Sequence

TATTATACTCCTACTTGTGTTTGTCTNTGTGAAATTGGGAATCATGAACCCATGATCATGTTTTGTTAGGTTAAGAAGGN
AAAAGAAATGTGTGTTAAATACTTCAATTATGTAAACTCTGTTNTTNAGTATTTGGCCACTTGAGGAATAATTCTTGCAG
ACCAGCNATTTGGCACGAATACATTTTATAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis