Browse Element(s) Details


Os.46784.2.S1_x_at

Description gb:AF229169.1
DB_XREF= gi:7208419
TID=Os.46784.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative inorganic phosphate transporter (OSJNBa0094K20.1), mRNA
DEF=Oryza sativa cultivar Indica phosphate transporter mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g307707/11inorganic phosphate transporter, putative, expressed
LOC_Os10g307903/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA
LOC_Os10g30820OsAffx.30617.1.S1_at11/1110+15722780..15723483hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46784.2.S1_x_at--3--8191Chr10:15698757..15698781 (25 bp)
GGAAGAGCGTGTACGGCTTCACGCT
LOC_Os10g30770
Os.46784.2.S1_x_at--76--10532Chr10:15698774..15698798 (25 bp)
TTCACGCTCGTGCTCATGGTGGTGT
LOC_Os10g30770
Os.46784.2.S1_x_at--312--9631Chr10:15698787..15698811 (25 bp)
TCATGGTGGTGTGCTCCGTCGCGTC
LOC_Os10g30770
Os.46784.2.S1_x_at--432--9452Chr10:15698909..15698933 (25 bp)
TCGGCGACGATCATGTCGGAGTACG
LOC_Os10g30770
Os.46784.2.S1_x_at--95--3951Chr10:15698989..15699013 (25 bp)
CGGCATCCTGTTCGGCGCCATCGTG
LOC_Os10g30770
Os.46784.2.S1_x_at--601--8412Chr10:15699097..15699121 (25 bp)
GGCCGACTACGTGTGGCGGATCATC
LOC_Os10g30770
Os.46784.2.S1_x_at--48--7552Chr10:15699109..15699133 (25 bp)
GTGGCGGATCATCCTCATGTTCGGC
LOC_Os10g30770
Os.46784.2.S1_x_at--766--4131NONE
CGCTCAACTACTACTTGCGCATGAA
NONE
Os.46784.2.S1_x_at--919--2051NONE
ACTTGCGCATGAAAATGCCCGGAGA
NONE
Os.46784.2.S1_x_at--712--5971NONE
GAGAACGGCGAGGTACACCGGCTCA
NONE
Os.46784.2.S1_x_at--639--8391NONE
GGCGCAAACGCCAAGCAAGGCCGGC
NONE
Target Sequence 
GGAAGAGCGTGTACGGCTTCACGCTCGTGCTCATGGTGGTGTGCTCCGTCGCGTCGGGCCTCTCGTTCGGGCGCACGGCG
AAGGGCGTCGTCGCCACGCTCTGCTTCTTCCGCTTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCGCTGTCGGCGAC
GATCATGTCGGAGTACGCCAACAAGAGGACGCGCGGGGCGTTCATCGCCGCCGTGTTCGCCATGCAGGGGTTCGGCATCC
TGTTCGGCGCCATCGTGGCGCTCGTCGTGTCGGCCGGGTTCCGGAACGCGTACCCGGCGCCGTCGTACGCCGACGGCCGC
GCGGCGTCGCTGGTGCCCGAGGCCGACTACGTGTGGCGGATCATCCTCATGTTCGGCACCCGTCCCGGCGGCGCTCAACT
ACTACTTGCGCATGAAAATGCCCGGAGAACGGCGAGGTACACCGGCTCATNGGCGCAAACGCCAAGCAAGGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46784.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis