Browse Element(s) Details


Os.46160.1.S1_at

Description gb:AK069054.1
DB_XREF= gi:32979078
TID=Os.46160.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphate transporter (OSJNBb0015F09b.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004G17, full insert sequence.
FL= gb:AK069054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3079011/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative
LOC_Os10g30770Os.46784.1.S1_x_at11/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30770Os.46784.2.S1_x_at7/1110+15698468..15700048inorganic phosphate transporter, putative, expressed
LOC_Os10g30790Os.46160.2.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.1.S1_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46160.2.S1_x_at11/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.2.S1_x_at3/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30790Os.46784.1.S1_x_at1/1110+15706012..15708840phosphate:H+ symporter family protein, expressed
LOC_Os10g30800OsAffx.5031.1.S1_x_at11/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.3.S1_x_at7/1110+15711737..15715861hypothetical protein
LOC_Os10g30800OsAffx.5031.2.S1_x_at5/1110+15711737..15715861hypothetical protein
LOC_Os10g30809NANA10+15718382..15719258NA
LOC_Os10g30820OsAffx.30617.1.S1_at11/1110+15722780..15723483hypothetical protein
LOC_Os10g30826OsAffx.19542.3.S1_x_at5/1110+15725902..15727677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30832NANA10+15728699..15729751retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46160.1.S1_at--19--5691Chr10:15706414..15706438 (25 bp)
GACTTGCACTATGATCTGAGTACGA
LOC_Os10g30790
Os.46160.1.S1_at--843--10091Chr10:15706366..15706390 (25 bp)
TATGAACTCCATACTTAGGCCACGT
LOC_Os10g30790
Os.46160.1.S1_at--994--7551Chr10:15706337..15706361 (25 bp)
GGGCCCACAGTACCTAGGTGACAAA
LOC_Os10g30790
Os.46160.1.S1_at--97--3131Chr10:15706287..15706311 (25 bp)
AATTTCTGACCAAAGGAGGCCTGCA
LOC_Os10g30790
Os.46160.1.S1_at--355--2311Chr10:15706276..15706300 (25 bp)
AAAGGAGGCCTGCATTGATGCCGAT
LOC_Os10g30790
Os.46160.1.S1_at--638--6351Chr10:15706260..15706284 (25 bp)
GATGCCGATGGCTCAATAAAGCAGC
LOC_Os10g30790
Os.46160.1.S1_at--170--8531Chr10:15706224..15706248 (25 bp)
TGGACAGCGTATTTTTCTGACAAAT
LOC_Os10g30790
Os.46160.1.S1_at--433--3111Chr10:15706202..15706226 (25 bp)
AATATCCGGCAAGTCTGAAGTTCAG
LOC_Os10g30790
Os.46160.1.S1_at--1064--3471Chr10:15706167..15706191 (25 bp)
CAGGCAGGGAAGAAGCGTGTTCACT
LOC_Os10g30790
Os.46160.1.S1_at--323--9651Chr10:15706124..15706148 (25 bp)
TCAGTCATTCTTGTTGACGCGGCAA
LOC_Os10g30790
Os.46160.1.S1_at--541--10731Chr10:15706111..15706135 (25 bp)
TTGACGCGGCAAACCCCAATTTAAG
LOC_Os10g30790
Target Sequence 
GACTTGCACTATGATCTGAGTACGAAGTCGAAATTGAGTATATTTGACTATGAACTCCATACTTAGGCCACGTTTGGGGG
CCCACAGTACCTAGGTGACAAAAACGAAATACAACAAATTTCGACGAAATTTCTGACCAAAGGAGGCCTGCATTGATGCC
GATGGCTCAATAAAGCAGCAGTTGAATTGTTGGACAGCGTATTTTTCTGACAAATATCCGGCAAGTCTGAAGTTCAGGAT
AAATAGCCAGGCAGGGAAGAAGCGTGTTCACTGAATTTTGCAAAATTTCTTCAGTCATTCTTGTTGACGCGGCAAACCCC
AATTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis