Browse Element(s) Details


Os.4689.1.S1_at

Description gb:AK098980.1
DB_XREF= gi:32984189
TID=Os.4689.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.4689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093N05, full insert sequence.
FL= gb:AK098874.1 gb:AK121641.1 gb:AK099712.1 gb:AK099889.1 gb:AK098980.1 gb:AK059991.1 gb:AK064955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0573011/11Cell division cycle protein 48 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4689.1.S1_at--108--9291Chr03:2832271..2832295 (25 bp)
TCCGGAAGTCACCTGTGGCCAAGGA
LOC_Os03g05730
Os.4689.1.S1_at--802--6271Chr03:2832248..2832272 (25 bp)
GATGTAGACCTGAATGCTCTTGCCA
LOC_Os03g05730
Os.4689.1.S1_at--439--9091Chr03:2832234..2832258 (25 bp)
TGCTCTTGCCAAATACACCCAAGGT
LOC_Os03g05730
Os.4689.1.S1_at--1140--7311Chr03:2832175..2832199 (25 bp)
GTGCATGCAAATACGCCATCAGAGA
LOC_Os03g05730
Os.4689.1.S1_at--302--6191Chr03:2832022..2832046 (25 bp)
GAGGAAGGACAACCCTGAAGCCATG
LOC_Os03g05730
Os.4689.1.S1_at--930--9031Chr03:2831873..2831897 (25 bp)
TGCAGCAGTCTCGTGGGTTCGGCAC
LOC_Os03g05730
Os.4689.1.S1_at--916--6711Chr03:2831857..2831881 (25 bp)
GTTCGGCACCGAGTTTAGGTTCGCT
LOC_Os03g05730
Os.4689.1.S1_at--1081--1191Chr03:2831846..2831870 (25 bp)
AGTTTAGGTTCGCTGACCAGCCAGC
LOC_Os03g05730
Os.4689.1.S1_at--580--7311Chr03:2831739..2831763 (25 bp)
GTGCTATTTATATTTAACCTCCGTG
LOC_Os03g05730
Os.4689.1.S1_at--61--2631Chr03:2831724..2831748 (25 bp)
AACCTCCGTGCTTTTGTTCAGTATG
LOC_Os03g05730
Os.4689.1.S1_at--244--3451Chr03:2831706..2831730 (25 bp)
CAGTATGTCTATTTCGCTTTGGTAA
LOC_Os03g05730
Target Sequence 
TCCGGAAGTCACCTGTGGCCAAGGATGTAGACCTGAATGCTCTTGCCAAATACACCCAAGGTTTCAGTGGTGCTGATATT
ACAGAAATCTGCCAGCGTGCATGCAAATACGCCATCAGAGAGAACATTGAAAAGGACATCGAGATGGAGAAGCGGAGGAA
GGACAACCCTGAAGCCATGGAGGAGGACGAGGTTGATGATATTGCTGAGATCAAGGCGGCTCACTTCGAGGAGTCGATGA
AGTACGCACGCCGGAGTGTGAGTGACGCCGACATCCGCAAGTACCAGGCCTTCGCCCAGACTCTGCAGCAGTCTCGTGGG
TTCGGCACCGAGTTTAGGTTCGCTGACCAGCCAGCGTCTGGCGCCGGCGCCGCCGCTGACCCCTTCGCATCCGCTGCCGC
CGCAGCTGACGATGATGATTTATATAGTTAGATCGCTGTGCTATTTATATTTAACCTCCGTGCTTTTGTTCAGTATGTCT
ATTTCGCTTTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis