Browse Element(s) Details


Os.26417.1.S1_at

Description gb:AY224589.1
DB_XREF= gi:29371982
TID=Os.26417.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26417 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
PROD=E2F dimerization factor
FL= gb:AY224589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0576011/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000082biological_processG1/S transition of mitotic cell cycle
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26417.1.S1_at--1157--6291Chr03:2853946..2853970 (25 bp)
GATGACTCATTTGTACTGAAAGCAA
LOC_Os03g05760
Os.26417.1.S1_at--1062--5991Chr03:2854030..2854054 (25 bp)
GAGAGCTCAAGCATGCCAAATATTT
LOC_Os03g05760
Os.26417.1.S1_at--381--10351Chr03:2854052..2854076 (25 bp)
TTTATAGGCAGCAAGTGCAGCAACC
LOC_Os03g05760
Os.26417.1.S1_at--952--5171Chr03:2854078..2854102 (25 bp)
GCAAGATCAACTAATGGTACAGCTA
LOC_Os03g05760
Os.26417.1.S1_at--395--7031Chr03:2854094..2854118 (25 bp)
GTACAGCTAGATTGCCAAGCTCACC
LOC_Os03g05760
Os.26417.1.S1_at--657--7431Chr03:2854171..2854195 (25 bp)
GTGTTTGTTGATTGTTGTCTGGCGT
LOC_Os03g05760
Os.26417.1.S1_at--1003--7171Chr03:2854187..2854211 (25 bp)
GTCTGGCGTGTTTGGTTTATTATTT
LOC_Os03g05760
Os.26417.1.S1_at--1155--8471Chr03:2854300..2854324 (25 bp)
TGGCGGGTGCCCTGACCAGACCTGT
LOC_Os03g05760
Os.26417.1.S1_at--470--4891Chr03:2854351..2854375 (25 bp)
GCTTTTAATCTGTTCCGCCATGGTT
LOC_Os03g05760
Os.26417.1.S1_at--571--6111Chr03:2854442..2854466 (25 bp)
GAGTGAAATTTCAGCCTTTTGCATG
LOC_Os03g05760
Os.26417.1.S1_at--1146--3371Chr03:2854453..2854477 (25 bp)
CAGCCTTTTGCATGCTTATTGTAGG
LOC_Os03g05760
Target Sequence 
GATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATNTAATTTCAAATGG
AGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGAT
TGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGT
TGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTT
ATTCCGATTTAACGCTGCAGTNTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTNT
AACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTNTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGT
AGTTAGCATTTGATNTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis