Browse Element(s) Details


Os.49591.1.S1_at

Description gb:AK102357.1
DB_XREF= gi:32987566
TID=Os.49591.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091H19, full insert sequence.
FL= gb:AK102357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g057509/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49591.1.S1_at--1014--9091NONE
TGCTCGGTGATGTGATCGCCATGCC
NONE
Os.49591.1.S1_at--836--591NONE
ATGCCTCCGGCGACAGAGCTCAGAG
NONE
Os.49591.1.S1_at--428--6231Chr03:2845721..2845745 (25 bp)
GAGGCCAATCTGACGACATGTACAT
LOC_Os03g05750
Os.49591.1.S1_at--179--7031Chr03:2845702..2845726 (25 bp)
GTACATACCGAGGACTTTAGACTTA
LOC_Os03g05750
Os.49591.1.S1_at--196--6451Chr03:2845674..2845698 (25 bp)
GATCAGAGGCATCCACCAAACGTGT
LOC_Os03g05750
Os.49591.1.S1_at--146--2391Chr03:2845657..2845681 (25 bp)
AAACGTGTTGTTATGCTTTCGATCA
LOC_Os03g05750
Os.49591.1.S1_at--803--631Chr03:2845645..2845669 (25 bp)
ATGCTTTCGATCAATTTTTGTCCAA
LOC_Os03g05750
Os.49591.1.S1_at--564--10471Chr03:2845618..2845642 (25 bp)
TTACCCCTTCTGTTGTAGCGTCATT
LOC_Os03g05750
Os.49591.1.S1_at--621--8031Chr03:2845518..2845542 (25 bp)
GGAGTGATGATCTTTTGGTCGCAAA
LOC_Os03g05750
Os.49591.1.S1_at--300--7211Chr03:2845501..2845525 (25 bp)
GTCGCAAAATGCGTGCCTAGTCAGA
LOC_Os03g05750
Os.49591.1.S1_at--926--4651Chr03:2845491..2845515 (25 bp)
GCGTGCCTAGTCAGAGATGTTGGTT
LOC_Os03g05750
Target Sequence 
TGCTCGGTGATGTGATCGCCATGCCTCCGGCGACAGAGCTCAGAGGCCAATCTGACGACATGTACATACCGAGGACTTTA
GACTTAGAAGATCAGAGGCATCCACCAAACGTGTTGTTATGCTTTCGATCAATTTTTGTCCAAACTTACCCCTTCTGTTG
TAGCGTCATTTTTTTTAGATCAATTCTTGACTGGTTAAGCGAAATTTGATTTTAACTAGAGTATTAGCGGATGAAATGGA
CTGATGGAGTGATGATCTTTTGGTCGCAAAATGCGTGCCTAGTCAGAGATGTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis