Browse Element(s) Details


Os.54757.1.S1_at

Description gb:AK106694.1
DB_XREF= gi:32991903
TID=Os.54757.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C12, full insert sequence.
FL= gb:AK106694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0561011/11phosphate transporter HvPT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54757.1.S1_at--823--3911Chr03:2784520..2784544 (25 bp)
CTGGCAACCAGGTCATCTTCGTCTT
LOC_Os03g05610
Os.54757.1.S1_at--854--9591Chr03:2784682..2784706 (25 bp)
TCATCGGAGCATTCGGTTTCCTCTA
LOC_Os03g05610
Os.54757.1.S1_at--1082--7211Chr03:2784735..2784759 (25 bp)
GTCGACGCCGGCTACAAACCTGGGA
LOC_Os03g05610
Os.54757.1.S1_at--551--2191Chr03:2784748..2784772 (25 bp)
ACAAACCTGGGATTGGCGTGCGGAA
LOC_Os03g05610
Os.54757.1.S1_at--542--3791Chr03:2784801..2784825 (25 bp)
CTCGTTGGGTTCCTCATGACATGGA
LOC_Os03g05610
Os.54757.1.S1_at--434--671Chr03:2784816..2784840 (25 bp)
ATGACATGGATGCTCGTGCCGGAAT
LOC_Os03g05610
Os.54757.1.S1_at--410--1991Chr03:2784922..2784946 (25 bp)
ACTCGTCCGGAGTTGAGATGGTGTA
LOC_Os03g05610
Os.54757.1.S1_at--686--6251Chr03:2784938..2784962 (25 bp)
GATGGTGTAATCCTTCAGGACGCAA
LOC_Os03g05610
Os.54757.1.S1_at--265--8111Chr03:2784955..2784979 (25 bp)
GGACGCAACGAGATGACGAACACTT
LOC_Os03g05610
Os.54757.1.S1_at--206--2191Chr03:2784974..2784998 (25 bp)
ACACTTGCATGCGAAGCTCGTACTT
LOC_Os03g05610
Os.54757.1.S1_at--1162--3771Chr03:2784990..2785014 (25 bp)
CTCGTACTTGTAGCGTGATAGGAAA
LOC_Os03g05610
Target Sequence 
CTGGCAACCAGGTCATCTTCGTCTTCCTCTACGGCTTCACCTTCTTCTTCGCCAACTTTGGGCCGAACGCGACGACGTTC
ATCGTGCCGGCCGAGATCTTCCCGGCGCGTCTCCGGTCAACCTGCCACGGCATCTCCGCCGCGTCTGGCAAGGCCGGCGC
GATCATCGGAGCATTCGGTTTCCTCTACGCGGCGCAGCCACAGGACAAGGCGCATGTCGACGCCGGCTACAAACCTGGGA
TTGGCGTGCGGAACGCGCTCTTCGTGCTCGCCGGGTGCAACCTCGTTGGGTTCCTCATGACATGGATGCTCGTGCCGGAA
TCGAAAGGGAAGTCGCTGGAGGAGATGTCCGGCGAGGCCGACGACGAGGAAGCTTCTGCCAACGGCGGTGCCACCGCCGT
CAACTCGTCCGGAGTTGAGATGGTGTAATCCTTCAGGACGCAACGAGATGACGAACACTTGCATGCGAAGCTCGTACTTG
TAGCGTGATAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis