Browse Element(s) Details


Os.20060.1.S1_at

Description gb:AK109394.3
DB_XREF= gi:42821782
TID=Os.20060.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E06, full insert sequence.
FL= gb:AK109394.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0557011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20060.1.S1_at--408--10111Chr03:2756308..2756332 (25 bp)
TATGACGCGTCCAGCCGGGAACTGG
LOC_Os03g05570
Os.20060.1.S1_at--1022--791Chr03:2756248..2756272 (25 bp)
ATGGGCCACGGGATCAGCTCGTGCA
LOC_Os03g05570
Os.20060.1.S1_at--557--6431Chr03:2756237..2756261 (25 bp)
GATCAGCTCGTGCAGGTTCCCCAAG
LOC_Os03g05570
Os.20060.1.S1_at--560--831Chr03:2756173..2756197 (25 bp)
ATGGATTGCTTCCTAGGCGATCTCG
LOC_Os03g05570
Os.20060.1.S1_at--174--7351Chr03:2755931..2755955 (25 bp)
GTGCAACCTAATTAACTCGCTCTTA
LOC_Os03g05570
Os.20060.1.S1_at--758--2531Chr03:2755918..2755942 (25 bp)
AACTCGCTCTTACCGCTTAATTAAT
LOC_Os03g05570
Os.20060.1.S1_at--667--6071Chr03:2755890..2755914 (25 bp)
GAGTTACTAGCCATTTGTGCCACTT
LOC_Os03g05570
Os.20060.1.S1_at--769--211Chr03:2755878..2755902 (25 bp)
ATTTGTGCCACTTGTGTGCGTGCAA
LOC_Os03g05570
Os.20060.1.S1_at--38--7311Chr03:2755863..2755887 (25 bp)
GTGCGTGCAATGTGTACAGCAGATA
LOC_Os03g05570
Os.20060.1.S1_at--594--5211Chr03:2755823..2755847 (25 bp)
GAATTTTGCCGTTCCATTGATTACT
LOC_Os03g05570
Os.20060.1.S1_at--73--4271Chr03:2755767..2755791 (25 bp)
CCGGACATGTCAATCTTTCGTACGT
LOC_Os03g05570
Target Sequence 
TATGACGCGTCCAGCCGGGAACTGGCCGCCGGCGAGAGGCGCATCGACGCCGCCGCGAGGATGGGCCACGGGATCAGCTC
GTGCAGGTTCCCCAAGACCGGNGCCGAGCAGGANCCGATCCGGCGATCCTTCTCCATGGATTGCTTCCTAGGCGATCTCG
GCCGGAAGCCACCGCCGCCGCCGCCGAAGGATCCCGCAGGCTCGGAGGCCGGGCCGAGCCACCCCGACGCGGCCGGNAGC
AGCAGTATCGTCGGCACCNGCCGGCGCCGGCGAGACCAGCGGCCGGTTNCGGCGGTTGCTGTCGTCGTTCGGGCNTCGGC
CGGAGCTCGCGGAGCACGGTGTTGCCCATCCACCTCGACCCATGAACCACCTCGGGTTCGTGCAACCTAATTAACTCGCT
CTTACCGCTTAATTAATTGAGAGTTACTAGCCATTTGTGCCACTTGTGTGCGTGCAATGTGTACAGCAGATAGCAGAATT
GGGGTTGGAATTTTGCCGTTCCATTGATTACTTCTTGGCTCCTTGCATCTCAAGTGTTCCCGCCCGGACATGTCAATCTT
TCGTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis