Browse Element(s) Details


OsAffx.24982.1.S1_at

Description tigr:9631.m00478
TID=OsAffx.24982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0554011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24982.1.S1_at--87--7871Chr03:2741072..2741096 (25 bp)
GGTATATCTTTATGAGTGGCAGTTA
LOC_Os03g05540
OsAffx.24982.1.S1_at--474--5031Chr03:2741090..2741114 (25 bp)
GCAGTTAGTGCATGACACAGTTTGT
LOC_Os03g05540
OsAffx.24982.1.S1_at--318--5631Chr03:2741103..2741127 (25 bp)
GACACAGTTTGTGTATCGAGCACTG
LOC_Os03g05540
OsAffx.24982.1.S1_at--497--9371Chr03:2741118..2741142 (25 bp)
TCGAGCACTGGAAATCATGATACTT
LOC_Os03g05540
OsAffx.24982.1.S1_at--1040--8831Chr03:2741135..2741159 (25 bp)
TGATACTTGATGATGTCCACTACTT
LOC_Os03g05540
OsAffx.24982.1.S1_at--271--6271Chr03:2741146..2741170 (25 bp)
GATGTCCACTACTTCACTTTTAGAA
LOC_Os03g05540
OsAffx.24982.1.S1_at--949--10191Chr03:2741171..2741195 (25 bp)
TATTTACCTGACGAGAACTGGATTC
LOC_Os03g05540
OsAffx.24982.1.S1_at--629--7931Chr03:2741190..2741214 (25 bp)
GGATTCATGTATTTGCCAAGTTGGA
LOC_Os03g05540
OsAffx.24982.1.S1_at--643--5331Chr03:2741213..2741237 (25 bp)
GAAGTATCAGTTCTACTCCTTCCGT
LOC_Os03g05540
OsAffx.24982.1.S1_at--508--9232Chr04:7373794..7373813 (20 bp)
TCCTTCCGTTTCAAATTACTTGTCG
NONE
OsAffx.24982.1.S1_at--424--7211Chr03:2741250..2741274 (25 bp)
GTCGTTTTAGTTTAGCTTTGTCAAT
LOC_Os03g05540
Target Sequence 
GGTATATCTTTATGAGTGGCAGTTAGTGCATGACACAGTTTGTGTATCGAGCACTGGAAATCATGATACTTGATGATGTC
CACTACTTCACTTTTAGAATATTTACCTGACGAGAACTGGATTCATGTATTTGCCAAGTTGGAAGTATCAGTTCTACTCC
TTCCGTTTCAAATTACTTGTCGTTTTAGTTTAGCTTTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis