Browse Element(s) Details


OsAffx.12741.1.S1_at

Description tigr:9631.m00480
TID=OsAffx.12741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0556011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12741.1.S1_at--1016--6271Chr03:2750463..2750487 (25 bp)
GATGATACACCGATTCGTCAACCAT
LOC_Os03g05560
OsAffx.12741.1.S1_at--418--6551Chr03:2750452..2750476 (25 bp)
GATTCGTCAACCATCCTACGTAGGG
LOC_Os03g05560
OsAffx.12741.1.S1_at--838--9691Chr03:2750446..2750470 (25 bp)
TCAACCATCCTACGTAGGGCAACAG
LOC_Os03g05560
OsAffx.12741.1.S1_at--163--7611Chr03:2750430..2750454 (25 bp)
GGGCAACAGCCGTACGTATACGTAT
LOC_Os03g05560
OsAffx.12741.1.S1_at--321--1892Chr06:2206627..2206676 (25 bp)
ACGTATGTACGTACGGTGCCGGCCT
NONE
OsAffx.12741.1.S1_at--333--9931Chr03:2750400..2750424 (25 bp)
TACGGTGCCGGCCTGTACATTTGCT
LOC_Os03g05560
OsAffx.12741.1.S1_at--174--8431Chr03:2750391..2750415 (25 bp)
GGCCTGTACATTTGCTCGCTAGCTA
LOC_Os03g05560
OsAffx.12741.1.S1_at--1018--2072Chr08:18392483..18392505 (22 bp)
ACATTTGCTCGCTAGCTAGTACGTA
NONE
OsAffx.12741.1.S1_at--760--4811Chr03:2750370..2750394 (25 bp)
GCTAGTACGTAGCATGCAGTAGTTG
LOC_Os03g05560
OsAffx.12741.1.S1_at--954--4971Chr03:2750359..2750383 (25 bp)
GCATGCAGTAGTTGGTGGTGAAAAT
LOC_Os03g05560
OsAffx.12741.1.S1_at--470--10571Chr03:2750330..2750354 (25 bp)
TTCTTTTGTAGCTAGGCAAGCTTTT
LOC_Os03g05560
Target Sequence 
GATGATACACCGATTCGTCAACCATCCTACGTAGGGCAACAGCCGTACGTATACGTATGTACGTACGGTGCCGGCCTGTA
CATTTGCTCGCTAGCTAGTACGTAGCATGCAGTAGTTGGTGGTGAAAATTCAATTCTTTTGTAGCTAGGCAAGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis