Browse Element(s) Details


Os.9449.1.S1_at

Description gb:AK062479.1
DB_XREF= gi:32972497
TID=Os.9449.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G01, full insert sequence.
FL= gb:AK062479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3392011/1160S ribosomal protein L34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33929NANA8+21103001..21103731NA
LOC_Os08g33940OsAffx.30006.2.S1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g33940Os.27085.1.A1_at11/118+21106334..21109547Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9449.1.S1_at--1091--10651Chr08:21088938..21088962 (25 bp)
TTCCCCACTTGAGGCCTGCTGAGTA
LOC_Os08g33920
Os.9449.1.S1_at--506--2211Chr08:21088673..21088697 (25 bp)
ACAAGACCGCAAAGTAGAGCTCCTT
LOC_Os08g33920
Os.9449.1.S1_at--594--1371Chr08:21088658..21088682 (25 bp)
AGAGCTCCTTTGTAAGGGTTGCACA
LOC_Os08g33920
Os.9449.1.S1_at--873--7671Chr08:21088643..21088667 (25 bp)
GGGTTGCACAATGCTGTTTTGTACA
LOC_Os08g33920
Os.9449.1.S1_at--199--6831Chr08:21088578..21088602 (25 bp)
GTTTAGCATGTGAGAGACCTACCTT
LOC_Os08g33920
Os.9449.1.S1_at--1095--7871Chr08:21088543..21088567 (25 bp)
GGTTTTCAAATCCTCTCATCTTATA
LOC_Os08g33920
Os.9449.1.S1_at--500--8031Chr08:21088512..21088536 (25 bp)
GGAGTATTGGGACATCTGATCCCCT
LOC_Os08g33920
Os.9449.1.S1_at--815--8851Chr08:21088496..21088520 (25 bp)
TGATCCCCTTGTTCCTTAATTATGA
LOC_Os08g33920
Os.9449.1.S1_at--96--7691Chr08:21088452..21088476 (25 bp)
GGGTACTAGTCGAATTCACCTACAT
LOC_Os08g33920
Os.9449.1.S1_at--524--3512Chr11:11331013..11331070 (24 bp)
CATGTTAGCCATCTTTTTATTTGAC
NONE
Os.9449.1.S1_at--539--10731Chr08:21088410..21088434 (25 bp)
TTGACTTAATTCACTCCCTTAAATG
LOC_Os08g33920
Target Sequence 
TTCCCCACTTGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGNAACCGCAGGACTGTGAACCGTCCATATGGTGG
AGTGCTCTCTGGAACTGCAGTTAGGGAAAGGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCC
TGAAAATACAGAAAACCAAGGACAAGACCGCAAAGTAGAGCTCCTTTGTAAGGGTTGCACAATGCTGTTTTGTACACAGT
GAAGAGTATTTTTGATGGTGGTTTATGTTGGATGATGTTTAGCATGTGAGAGACCTACCTTTTGAGTTTAGGGTTTTCAA
ATCCTCTCATCTTATAATTGTCGGAGTATTGGGACATCTGATCCCCTTGTTCCTTAATTATGAAATTTCTGTATGAACTA
TTGGGTACTAGTCGAATTCACCTACATGTTAGCCATCTTTTTATTTGACTTAATTCACTCCCTTAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis