Browse Element(s) Details


OsAffx.29496.1.S1_at

Description tigr:9636.m03398
TID=OsAffx.29496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAAX amino terminal protease family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3390011/11CAAX amino terminal protease family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33929NANA8+21103001..21103731NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29496.1.S1_at--975--3691Chr08:21076953..21076977 (25 bp)
CTACCGGCCGTTCTCAAATGATATA
LOC_Os08g33900
OsAffx.29496.1.S1_at--426--4851Chr08:21077244..21077268 (25 bp)
GCTACTATGGGCTGGGATCGGTTTC
LOC_Os08g33900
OsAffx.29496.1.S1_at--575--7971Chr08:21077258..21077282 (25 bp)
GGATCGGTTTCTTTGCCGCAATAAT
LOC_Os08g33900
OsAffx.29496.1.S1_at--897--10451Chr08:21077293..21077317 (25 bp)
TTAGCTGGAGCTGCAATGTCCTTTC
LOC_Os08g33900
OsAffx.29496.1.S1_at--573--4031Chr08:21077492..21077516 (25 bp)
CGTTGGTCCTTTTATTGCCACTAAT
LOC_Os08g33900
OsAffx.29496.1.S1_at--966--4391Chr08:21077508..21077532 (25 bp)
GCCACTAATTGGCTCGTCTAATATT
LOC_Os08g33900
OsAffx.29496.1.S1_at--1035--7871Chr08:21077867..21077891 (25 bp)
GGTTTTCTACTCCAATTTCTGTGCT
LOC_Os08g33900
OsAffx.29496.1.S1_at--547--10311Chr08:21077882..21077906 (25 bp)
TTTCTGTGCTTATCACTGCTTCAGT
LOC_Os08g33900
OsAffx.29496.1.S1_at--469--10271Chr08:21077914..21077938 (25 bp)
TTTGCTCATCTTACACCAGGCGAAT
LOC_Os08g33900
OsAffx.29496.1.S1_at--857--3471Chr08:21077930..21077954 (25 bp)
CAGGCGAATTTCCACAGCTATTTGT
LOC_Os08g33900
OsAffx.29496.1.S1_at--960--6991Chr08:21078166..21078190 (25 bp)
GTACTGGGATTCTCATATGCTCAAA
LOC_Os08g33900
Target Sequence 
CTACCGGCCGTTCTCAAATGATATATTTCGTTATGATTTGAAAGAGCCGTTTAAGCTTGAAAATGGTTGGCTACTATGGG
CTGGGATCGGTTTCTTTGCCGCAATAATCTCTATTGCTTTAGCTGGAGCTGCAATGTCCTTTCTGGGTGGTGAAACTCCA
GAGCGAGAGACCGACTCGTTGGTCCTTTTATTGCCACTAATTGGCTCGTCTAATATTAGCACTGCCTGTTTACTGGGCAT
CACTGGGGTTCTTGCGCCGATTCTGGAAGAAACTGTGTTTCGAGGATTTCTAATGGTGTCCTTGACCATGTGGTTTTCTA
CTCCAATTTCTGTGCTTATCACTGCTTCAGTGTTTGCCTTTGCTCATCTTACACCAGGCGAATTTCCACAGCTATTTGTG
CTTGGTATTGTACTGGGATTCTCATATGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis