Browse Element(s) Details


OsAffx.6018.1.S1_at

Description tigr:9636.m03396
TID=OsAffx.6018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AN1-like Zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g338807/11AN1-like Zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative
LOC_Os08g33910Os.53506.1.S1_at11/118+21085383..21087407NAC-domain containing protein 9, putative, expressed
LOC_Os08g33920Os.9449.1.S1_at11/118+21088391..2109021060S ribosomal protein L34, putative, expressed
LOC_Os08g33920Os.11043.1.S1_x_at1/118+21088391..2109021060S ribosomal protein L34, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6018.1.S1_at--669--7211Chr08:21072699..21072723 (25 bp)
GTCGATGTGCGCGAACGGGTGCGGC
LOC_Os08g33880
OsAffx.6018.1.S1_at--69--8411NONE
GGCGCCTGACCTCCAAGGAGACAAC
NONE
OsAffx.6018.1.S1_at--636--3811NONE
CTCCAAGGAGACAACACATGTGCTT
NONE
OsAffx.6018.1.S1_at--56--5991NONE
GAGACAACACATGTGCTTCAAGTGC
NONE
OsAffx.6018.1.S1_at--143--3271NONE
CAACACATGTGCTTCAAGTGCTACC
NONE
OsAffx.6018.1.S1_at--19--2671Chr08:21073126..21073150 (25 bp)
AAGCCTAACAGGTGCGTGGCGTGCC
LOC_Os08g33880
OsAffx.6018.1.S1_at--833--3731Chr08:21073130..21073154 (25 bp)
CTAACAGGTGCGTGGCGTGCCGGAA
LOC_Os08g33880
OsAffx.6018.1.S1_at--449--7571Chr08:21073162..21073186 (25 bp)
GGGCTGCTGGGCTTCGAGTGCCGAT
LOC_Os08g33880
OsAffx.6018.1.S1_at--586--4471Chr08:21073231..21073255 (25 bp)
GCCTGCACCTTCGACTTCAAGAAGA
LOC_Os08g33880
OsAffx.6018.1.S1_at--206--5691Chr08:21073243..21073267 (25 bp)
GACTTCAAGAAGAGCGACCGGGAGA
LOC_Os08g33880
OsAffx.6018.1.S1_at--249--9731Chr08:21073247..21073271 (25 bp)
TCAAGAAGAGCGACCGGGAGAAGAT
LOC_Os08g33880
Target Sequence 
GTCGATGTGCGCGAACGGGTGCGGCTTCTTCGGCAGCGAGGCGACCAAGAAGCTCTGCTCCAAGTGCTACCGCGACCAGC
TCAAGGCGGCGCCGTCGTCGCCGCCGGCGGCGCCTGACCTCCAAGGAGACAACACATGTGCTTCAAGTGCTACCGCGACA
CCTCAAGGCGACGTCGCGTTGTTCTCGTCGTCGTCGTCGCCGGCCACCGCATCCACTACNGACATCACCGTCCCCATTGC
TCCGGCCACCACGGCGCCGACGCCGTCGCTCAAGGGGAAGGAGGAGGAGGCGACCGCCGCCGCGTCATCGTCGGCGGCGG
CGGCGGCGAAGCCTAACAGGTGCGTGGCGTGCCGGAAGAAGGTGGGGCTGCTGGGCTTCGAGTGCCGATGCGGCGGCACG
TTCTGCTCGACGCACCGCCACGCCGACAAGCACGCCTGCACCTTCGACTTCAAGAAGAGCGACCGGGAGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis