Browse Element(s) Details


Os.50546.1.S1_at

Description gb:AK121738.1
DB_XREF= gi:37991361
TID=Os.50546.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084N15, full insert sequence.
FL= gb:AK121738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1519011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15160NANA3+8260070..8266794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g15170NANA3+8269979..8271098hypothetical protein
LOC_Os03g15180NANA3+8273742..8285315PH domain containing protein, expressed
LOC_Os03g15190Os.50546.1.S1_at11/113+8286349..8290609expressed protein
LOC_Os03g15190OsAffx.22433.3.S1_s_at8/113+8286349..8290609expressed protein
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50546.1.S1_at--381--8151Chr03:8287157..8287181 (25 bp)
GGAAATTCTCGATCTCTTTCGAATG
LOC_Os03g15190
Os.50546.1.S1_at--996--2971Chr03:8286749..8286773 (25 bp)
AATGAGTATCTCTGGCATCAATCTG
LOC_Os03g15190
Os.50546.1.S1_at--560--2351Chr03:8286692..8286716 (25 bp)
AAAGCAGAGGCACATTTGTCATGGT
LOC_Os03g15190
Os.50546.1.S1_at--973--10071Chr03:8286620..8286644 (25 bp)
TTGAAACCTCGCTTTTGAAACCTCG
LOC_Os03g15190
Os.50546.1.S1_at--709--2931Chr03:8286592..8286616 (25 bp)
AAGGCGTGACTGTGTGGTTACCATC
LOC_Os03g15190
Os.50546.1.S1_at--7--9951Chr03:8286542..8286566 (25 bp)
TACGTATACCTTGGACAGTCGTCTG
LOC_Os03g15190
Os.50546.1.S1_at--479--5651Chr03:8286529..8286553 (25 bp)
GACAGTCGTCTGACATTCTCAGTAA
LOC_Os03g15190
Os.50546.1.S1_at--462--2991Chr03:8286418..8286442 (25 bp)
AATGTTTGTTGCTGCATCCGACAAA
LOC_Os03g15190
Os.50546.1.S1_at--824--2592Chr03:5712970..5712997 (25 bp)
AACCCTGGAGGGATTGTACACTTCG
NONE
Os.50546.1.S1_at--466--8751Chr03:8286379..8286403 (25 bp)
TGTACACTTCGGTTTGGTTCTGGTA
LOC_Os03g15190
Os.50546.1.S1_at--767--7831Chr03:8286358..8286382 (25 bp)
GGTAAGAAGTGCAGTCCTTGTCTCT
LOC_Os03g15190
Target Sequence 
GGAAATTCTCGATCTCTTTCGAATGTGAGACACTGAAGGCTGATAAAGCTGCAGATGAGCACATTAGCAAGTATATGCCA
AATCTAAGTGGAATGGATGCCATCGTAAATATAGGGAAAATGAGTATCTCTGGCATCAATCTGGACGAGGACGACGAACC
AAGTGGAGACAACTAAAAGCAGAGGCACATTTGTCATGGTGTGGTAGCAGTGGCTGGCTGGCCCTTGTTCTCCTCCCTCC
TTAGCTTTTGAAACCTCGCTTTTGAAACCTCGAAGAAGGCGTGACTGTGTGGTTACCATCAAACGCCAAAATTGCATCCA
AAAATTACGTATACCTTGGACAGTCGTCTGACATTCTCAGTAATCTGCTAATGTTAAGTCAATGTGGTTTGTGGAATCGT
GGGCAAGATGTTTCAAGAATTCAAGTACTCCTAATCAAGTGTTTAGCGTAATGTTTGTTGCTGCATCCGACAAAAACCCT
GGAGGGATTGTACACTTCGGTTTGGTTCTGGTAAGAAGTGCAGTCCTTGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis