Browse Element(s) Details


OsAffx.27508.42.S1_s_at

Description gb:AK063163.1
DB_XREF= gi:32973181
TID=OsAffx.27508.42
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B01, full insert sequence.
FL= gb:AK063163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1523011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15180NANA3+8273742..8285315PH domain containing protein, expressed
LOC_Os03g15190Os.50546.1.S1_at11/113+8286349..8290609expressed protein
LOC_Os03g15190OsAffx.22433.3.S1_s_at8/113+8286349..8290609expressed protein
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.42.S1_s_at--980--8711Chr03:8308734..8308758 (25 bp)
TGTCGGCGCTGGAACGCAGCAACGA
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--950--5151Chr03:8308716..8308740 (25 bp)
GCAACGAGCACATCGCGCGGCACGA
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--400--2791Chr03:8308568..8308592 (25 bp)
AAGATGAGGTGGTGTCTTCCGGTCG
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--867--9571Chr03:8308554..8308578 (25 bp)
TCTTCCGGTCGTTGGTTTTGGCGCG
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--1036--7551Chr03:8308474..8308498 (25 bp)
GGGCCGTTGCTTTTTTGCTGGCAAA
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--989--10071Chr03:8308461..8308485 (25 bp)
TTTGCTGGCAAACCGGAGGTTCGTC
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--727--9831Chr03:8308418..8308442 (25 bp)
TACAGGGAAAGGGATCCCCTGGCTT
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--473--551Chr03:8308405..8308429 (25 bp)
ATCCCCTGGCTTAACAGCTGTGCAG
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--927--2151Chr03:8308392..8308416 (25 bp)
ACAGCTGTGCAGTTGAGTCATGTCA
LOC_Os03g15230
OsAffx.27508.42.S1_s_at--1146--3832Chr06:5488864..5488888 (25 bp)
CTGCATGTGCAGTTAAATTAGAGGA
NONE
OsAffx.27508.42.S1_s_at--607--2131Chr03:8308319..8308343 (25 bp)
ACAGATATGATATTCTGCCTCTGGG
LOC_Os03g15230
Target Sequence 
TGTCGGCGCTGGAACGCAGCAACGAGCACATCGCGCGGCACGAGGAGGTGCGCAGGATCGGCACCGGCGAGCGGGTGCTC
CAGGAGAGGGTGTACGGCGCCGGCGGCGCGCCGGGGCGCGCGCCGCTGAACCAGGAGCAGGGGAGGCTCAACTCGGTGCG
CACCCGAAGATGAGGTGGTGTCTTCCGGTCGTTGGTTTTGGCGCGGCGCAGCGCATTGGTCAGTCAGCTCAACTGTTGAA
TTCCGGTGCAGGAGAACTGGGGGCCGTTGCTTTTTTGCTGGCAAACCGGAGGTTCGTCGCGCGGGATCCCTGGAGATACA
GGGAAAGGGATCCCCTGGCTTAACAGCTGTGCAGTTGAGTCATGTCAGTGACTCAACTGCATGTGCAGTTAAATTAGAGG
ATCTGCTTTCGAGATACAGATATGATATTCTGCCTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.42.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis