Browse Element(s) Details


OsAffx.12872.1.S1_x_at

Description tigr:9631.m01470
TID=OsAffx.12872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1525011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12872.1.S1_x_at--394--71Chr03:8319623..8319647 (25 bp)
ATTGCATCTGGCTTATTGTACCTCC
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--291--5691Chr03:8319512..8319536 (25 bp)
GACTTCGGCCTTGCAAGGTTGTACG
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--92--8471Chr03:8319351..8319375 (25 bp)
TGGCCGAAGGCCTCTGGAACATGAC
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--75--9391Chr03:8319310..8319334 (25 bp)
TCGTGCTACTGGATTGGGTGCTTGA
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--808--3291Chr03:8319269..8319293 (25 bp)
CAAATTCTTGACGTGGTGGATCCCA
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--221--8631Chr03:8319256..8319280 (25 bp)
TGGTGGATCCCAGGCTCAGCAGTGA
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--585--8211Chr03:8319148..8319172 (25 bp)
GGCAAGTCCTGCAGTACCCTAATGG
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--1072--9751Chr03:8319129..8319153 (25 bp)
TAATGGCACTGTGCTGGCACCAGAG
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--1117--6271Chr03:8319105..8319129 (25 bp)
GATGTTGCCGACAGACTTGGACTAT
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--389--7912Chr03:8319051..8319075 (25 bp)
GGTTGAGTCATACGCCATGCTGGAA
LOC_Os03g15250
OsAffx.12872.1.S1_x_at--373--8191Chr03:8319030..8319054 (25 bp)
GGAAGCATCCTCATTGGCAACAACA
LOC_Os03g15250
Target Sequence 
ATTGCATCTGGCTTATTGTACCTCCATGAGGAATGGGAACAAGTCGTTGTACATCGAGACATCAAGGCAAATAACGTGCT
TCTCAACAATGAGATGAATGGATGCTTGGGCGACTTCGGCCTTGCAAGGTTGTACGACCATGGCACCAACCCAAGGACTA
CACATATTGTGGCCTGTGGCCGAAGGCCTCTGGAACATGACCTCCAGGACAACCAGGTCGTGCTACTGGATTGGGTGCTT
GAGAACTGGAACAGAGGACAAATTCTTGACGTGGTGGATCCCAGGCTCAGCAGTGAGTATGTTGCCGAGGAGGCGAACTT
GGTGCTGAAGCTGGGGCTCCTCTGCTTGCAGCCGTTGCCTAGTGCACGGCCGAGCATGCGGCAAGTCCTGCAGTACCCTA
ATGGCACTGTGCTGGCACCAGAGATGTTGCCGACAGACTTGGACTATGATACACTAATGTTTCTGCAGAATGAAAGGGTT
GAGTCATACGCCATGCTGGAAGCATCCTCATTGGCAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12872.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis