Browse Element(s) Details


OsAffx.25094.1.S1_at

Description tigr:9631.m01471
TID=OsAffx.25094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1526010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25094.1.S1_at--628--3751Chr03:8325572..8325596 (25 bp)
CTCTTCTCTCCAGCGGAGCGACGGG
LOC_Os03g15260
OsAffx.25094.1.S1_at--560--8351Chr03:8325635..8325659 (25 bp)
GGCGGCGGCCTAATTGTGGCGGGCA
LOC_Os03g15260
OsAffx.25094.1.S1_at--408--3431Chr03:8325788..8325812 (25 bp)
CAGAGCACGACGGAGCCAGAGCACG
LOC_Os03g15260
OsAffx.25094.1.S1_at--732--8371NONE
GGCGACAGCGAGATTTAGCATGGCA
NONE
OsAffx.25094.1.S1_at--119--1651Chr03:8327131..8327151 (21 bp)
AGCGAGATTTAGCATGGCACACTAT
LOC_Os03g15260
OsAffx.25094.1.S1_at--437--10331Chr03:8327134..8327158 (25 bp)
TTTAGCATGGCACACTATGCCAGGA
LOC_Os03g15260
OsAffx.25094.1.S1_at--777--8231Chr03:8327142..8327166 (25 bp)
GGCACACTATGCCAGGAAACTGCAA
LOC_Os03g15260
OsAffx.25094.1.S1_at--343--3331Chr03:8327146..8327170 (25 bp)
CACTATGCCAGGAAACTGCAAAAGA
LOC_Os03g15260
OsAffx.25094.1.S1_at--757--2751Chr03:8327167..8327191 (25 bp)
AAGAAAAGGAGTGGTCGTGACCAAT
LOC_Os03g15260
OsAffx.25094.1.S1_at--1091--7491Chr03:8327177..8327201 (25 bp)
GTGGTCGTGACCAATCAGACAGACA
LOC_Os03g15260
OsAffx.25094.1.S1_at--485--4371Chr03:8327187..8327211 (25 bp)
CCAATCAGACAGACAGTTACCAGTA
LOC_Os03g15260
Target Sequence 
CTCTTCTCTCCAGCGGAGCGACGGGGAGGAGTGGCGGCGACCGGAGTGGGGCGGGGAAGGAGCGGCGGCGGCCTAATTGT
GGCGGGCAAGGAGCGGAGGCCGCCAGAGTGGGGCGGGGAGGAGCGGGCCGGGCACCCGGCGGCGACGGCCCCCGCACCCG
CGACCTTCCTCGCCGGCACGGCGATCCATGGGTCCCCCGCCGCCGCGTCGCAGAGCCAGAGCACGACGGAGCCAGAGCAC
GGCGGCGCGTCGGGGAGCCAGAGCACGGCGGTGTGTCGGGGAGCCAGAGCACGGCAGCGCATCGGGGAGCCAGAGCACGG
CGACGCGTCGGGGACAAAGGGGCGCGTGATGGTGCCGTCCGGGTGGAAGAAGGGGAAGCTCCTCGCTCCGGCGGGCGGCC
GCTGACGAGCTTGGTGACAGTGGAGAAGAGAGGGGCGACAGCGAGATTTAGCATGGCACACTATGCCAGGAAACTGCAAA
AGAAAAGGAGTGGTCGTGACCAATCAGACAGACAGTTACCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis