Browse Element(s) Details


Os.49495.3.S1_at

Description gb:AK103486.1
DB_XREF= gi:32988695
TID=Os.49495.3
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130M07, full insert sequence.
FL= gb:AK063892.1 gb:AK103486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1524011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49495.3.S1_at--1105--8431Chr03:8318563..8318587 (25 bp)
GGCCAATGGCCAATGGGTTTCTCCA
LOC_Os03g15240
Os.49495.3.S1_at--382--7871Chr03:8318578..8318602 (25 bp)
GGTTTCTCCATGCTTGTACGTACAT
LOC_Os03g15240
Os.49495.3.S1_at--996--6971Chr03:8318593..8318617 (25 bp)
GTACGTACATTGCTCCTTTTGGAAT
LOC_Os03g15240
Os.49495.3.S1_at--487--9731Chr03:8318642..8318666 (25 bp)
TAATTGATTTGATGCCGAGTTCCTG
LOC_Os03g15240
Os.49495.3.S1_at--489--4031Chr03:8318657..8318681 (25 bp)
CGAGTTCCTGGAGACTTGAAAACAT
LOC_Os03g15240
Os.49495.3.S1_at--619--51Chr03:8318680..8318704 (25 bp)
ATTGATTTTGTTCCACATGCATAAT
LOC_Os03g15240
Os.49495.3.S1_at--21--8811Chr03:8318688..8318712 (25 bp)
TGTTCCACATGCATAATCTGGTATA
LOC_Os03g15240
Os.49495.3.S1_at--880--431Chr03:8318703..8318727 (25 bp)
ATCTGGTATAACATCAAGGTCCCTA
LOC_Os03g15240
Os.49495.3.S1_at--119--351Chr03:8318710..8318734 (25 bp)
ATAACATCAAGGTCCCTATGCGAAT
LOC_Os03g15240
Os.49495.3.S1_at--320--7251Chr03:8318721..8318745 (25 bp)
GTCCCTATGCGAATAACCTTGTGTT
LOC_Os03g15240
Os.49495.3.S1_at--77--591Chr03:8318727..8318751 (25 bp)
ATGCGAATAACCTTGTGTTCCCGTT
LOC_Os03g15240
Target Sequence 
GGCCAATGGCCAATGGGTTTCTCCATGCTTGTACGTACATTGCTCCTTTTGGAATTTGNTAGTTGCTTATTNGTCATCTT
AATTGATTTGATGCCGAGTTCCTGGAGACTTGAAAACATTGATTTTGTTCCACATGCATAATCTGGTATAACATCAAGGT
CCCTATGCGAATAACCTTGTGTTCCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49495.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis