Browse Element(s) Details


Os.50574.1.S1_at

Description gb:AK121908.1
DB_XREF= gi:37991531
TID=Os.50574.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105O06, full insert sequence.
FL= gb:AK121908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g122101/11hypothetical protein
LOC_Os01g651901/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12200NANA9+6896777..6897156hypothetical protein
LOC_Os09g12210Os.50574.1.S1_at1/119+6917070..6917850hypothetical protein
LOC_Os09g12210Os.27542.1.A1_at1/119+6917070..6917850hypothetical protein
LOC_Os09g12220OsAffx.17658.1.S1_at10/119+6927625..6928805hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50574.1.S1_at--486--3191Chr07:27485212..27485236 (25 bp)
CAATGCCTGTGTGGTGGTTACTGAG
NONE
Os.50574.1.S1_at--277--912Chr01:38158070..38158094 (25 bp)
AGGCGTAAGCCTCGCTCGGTGATCA
LOC_Os01g65190
Os.50574.1.S1_at--1115--1613Chr12:13676372..13676553 (25 bp)
AGCGGCTACGCCTTTGGGTGTCGTA
NONE
Os.50574.1.S1_at--1063--9491Chr07:27485036..27485060 (25 bp)
TCTCTGGGTGAAAACGGCATCTTTC
NONE
Os.50574.1.S1_at--1105--1932Chr04:28495308..28495327 (20 bp)
ACGGCATCTTTCTTAGATTGGCGAT
NONE
Os.50574.1.S1_at--531--2011Chr07:27484940..27484964 (25 bp)
ACTCTCGCCTTTGTGGTGTTGTTGA
NONE
Os.50574.1.S1_at--101--7491Chr07:27484877..27484901 (25 bp)
GTGGTCGTTTTGGTGCTCGGTTCCA
NONE
Os.50574.1.S1_at--430--4792Chr07:10227785..10227810 (25 bp)
GCTCGGTTCCATTTTCAGTGGTTTG
NONE
Os.50574.1.S1_at--281--3451Chr07:27484782..27484806 (25 bp)
CAGTTTATGTCGTATTTTCTTTGTA
NONE
Os.50574.1.S1_at--1161--231Chr07:27484752..27484776 (25 bp)
ATATACTCAGATGGCCTCCTTCAGC
NONE
Os.50574.1.S1_at--463--10511Chr07:27484733..27484757 (25 bp)
TTCAGCCTTTCCCAGCAAATAAACA
NONE
Target Sequence 
CAATGCCTGTGTGGTGGTTACTGAGTTGATGGGTGACAAACTACTTGAAAGGTTGCAGGGGTTCCAGGCGTAAGCCTCGC
TCGGTGATCACCGGACCGGCAGCGGCTACGCCTTTGGGTGTCGTAGCCCTCTTGGGGCGCTGTCGTGGGTACCTCTCCCC
CTTTCCTTGCAAGTTCTCTCTGGGTGAAAACGGCATCTTTCTTAGATTGGCGATGGCGGCGTCCTTGATGTCGTGACCTC
CATGGGGGTATCGTTTTTGGTATCGTTTTTGGACTCTCGCCTTTGTGGTGTTGTTGACTTGTTGTAGGCCGAGCGGCGAT
CGGCCACGCTTAGCGGTGGTCGTTTTGGTGCTCGGTTCCATTTTCAGTGGTTTGTGCTTGTGTGGTTAGCGTGTGGTTCC
TGGAGGTGCCTCGCGCACATCCGTCGTCGACAGTTTATGTCGTATTTTCTTTGTAACTTAATATACTCAGATGGCCTCCT
TCAGCCTTTCCCAGCAAATAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis