Browse Element(s) Details


OsAffx.17658.1.S1_at

Description tigr:9637.m00940
TID=OsAffx.17658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1222010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12210Os.50574.1.S1_at1/119+6917070..6917850hypothetical protein
LOC_Os09g12210Os.27542.1.A1_at1/119+6917070..6917850hypothetical protein
LOC_Os09g12220OsAffx.17658.1.S1_at10/119+6927625..6928805hypothetical protein
LOC_Os09g12230Os.50948.1.S1_at11/119+6946873..6949913Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os09g12240OsAffx.6248.1.S1_at11/119+6951229..6957911Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17658.1.S1_at--338--6751Chr09:6927681..6927705 (25 bp)
GTTCAAACCGGAGAAGAACACGGCA
LOC_Os09g12220
OsAffx.17658.1.S1_at--863--2471Chr09:6927697..6927721 (25 bp)
AACACGGCAGACGAGGTGGTCAAGC
LOC_Os09g12220
OsAffx.17658.1.S1_at--436--5691Chr09:6927745..6927769 (25 bp)
GACTTCGATGAAGTGTTCATGCTGG
LOC_Os09g12220
OsAffx.17658.1.S1_at--945--8611Chr09:6927770..6927794 (25 bp)
TGGTGAGGCTTGACACCATGCGCGT
LOC_Os09g12220
OsAffx.17658.1.S1_at--1067--911Chr09:6927775..6927799 (25 bp)
AGGCTTGACACCATGCGCGTCGTGC
LOC_Os09g12220
OsAffx.17658.1.S1_at--1120--4791Chr09:6927798..6927822 (25 bp)
GCTCGCTCTCGCAGCAGATCGGATA
LOC_Os09g12220
OsAffx.17658.1.S1_at--579--3771Chr09:6927803..6927826 (24 bp)
CTCTCGCAGCAGATCGGATAGCAGT
LOC_Os09g12220
OsAffx.17658.1.S1_at--948--4971NONE
GCAGATCGGATAGCAGTGACAAACT
NONE
OsAffx.17658.1.S1_at--517--2411Chr09:6928727..6928751 (25 bp)
AAAAATTATCGGGACATCACTGGGA
LOC_Os09g12220
OsAffx.17658.1.S1_at--653--9431Chr09:6928735..6928759 (25 bp)
TCGGGACATCACTGGGATATATACC
LOC_Os09g12220
OsAffx.17658.1.S1_at--262--6511Chr09:6928750..6928774 (25 bp)
GATATATACCATTCCCTTTCAGTGG
LOC_Os09g12220
Target Sequence 
GTTCAAACCGGAGAAGAACACGGCAGACGAGGTGGTCAAGCGAGGAGTGGAGCGGCAAGGAGTGGACTTCGATGAAGTGT
TCATGCTGGTGGTGAGGCTTGACACCATGCGCGTCGTGCTCGCTCTCGCAGCAGATCGGATAGCAGTGACAAACTCAGAA
AAAATTATCGGGACATCACTGGGATATATACCATTCCCTTTCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis