Browse Element(s) Details


Os.50616.1.S1_x_at

Description gb:AK064008.1
DB_XREF= gi:32974026
TID=Os.50616.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G09, full insert sequence.
FL= gb:AK122141.1 gb:AK064008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1525011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein
LOC_Os09g15240OsAffx.17712.1.S1_at11/119+9250213..9254027Retinal pigment epithelial membrane protein, expressed
LOC_Os09g15250Os.50616.1.S2_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S1_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S2_at8/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15260OsAffx.17713.1.S1_at11/119+9282476..9283035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50616.1.S1_x_at--1031--731Chr09:9267813..9267837 (25 bp)
ATGTTTCTCAGCTCAAGGGTGCTAA
LOC_Os09g15250
Os.50616.1.S1_x_at--1133--3691Chr09:9267834..9267858 (25 bp)
CTAAGGATTTCCAACCACCAGTGTT
LOC_Os09g15250
Os.50616.1.S1_x_at--942--7151Chr09:9267903..9267927 (25 bp)
GTCTCCTGGATTCCTGTACTTACAT
LOC_Os09g15250
Os.50616.1.S1_x_at--482--1011Chr09:9267931..9267955 (25 bp)
AGGTAATTCTCCAGTCCATCAAGTT
LOC_Os09g15250
Os.50616.1.S1_x_at--1061--3191Chr09:9267962..9267986 (25 bp)
CAATGGTCTCATTCGGTGCCAGATG
LOC_Os09g15250
Os.50616.1.S1_x_at--423--2411Chr09:9268017..9268041 (25 bp)
AAACAAGGTTCCCTGCTGCATTGGC
LOC_Os09g15250
Os.50616.1.S1_x_at--836--5412Chr09:9268099..9268123 (25 bp)
GAAGCCAAGCATTGTCGATGACGGT
LOC_Os09g15250
Os.50616.1.S1_x_at--204--5451Chr09:9268198..9268222 (25 bp)
GAACCCATTGTATACTGGGCCAGAT
LOC_Os09g15250
Os.50616.1.S1_x_at--128--10852Chr09:9268222..9268246 (25 bp)
TTGGGCCATGTAATAGTTGCGTGTA
LOC_Os09g15250
Os.50616.1.S1_x_at--554--3992Chr09:9268241..9268265 (25 bp)
CGTGTAGCTGTTGTGTTGCTGTCAC
LOC_Os09g15250
Os.50616.1.S1_x_at--76--8372Chr09:9268362..9268386 (25 bp)
GGCGGTGGCTCAATCCTGTTGGATT
LOC_Os09g15250
Target Sequence 
ATGTTTCTCAGCTCAAGGGTGCTAAGGATTTCCAACCACCAGTGTTGTCCGACCTGCCTGGCCCTAACCAAGACCTGCAA
TTCCCAGCTCGTCTCCTGGATTCCTGTACTTACATGAAAGGTAATTCTCCAGTCCATCAAGTTTTGGTTCAATGGTCTCA
TTCGGTGCCAGATGAAGCAACCTGGGAGGACTTGGAGGATTTATAAACAAGGTTCCCTGCTGCATTGGCTTGGGGACAAG
CCAATTGTCAAGGAAAGGGGATTGTCAGTGAACCTGAAGGGATGACGAAGCCAAGCATTGTCGATGACGGTGAACAGTTC
ACTGAAGAAGAAGGAGATGCTGATACAAGAGTGGGCCGGATATATCCAAGACGCGCAAGAAAGAAGAACCCATTGTATAC
TGGGCCAGATTGGGCCATGTAATAGTTGCGTGTAGCTGTTGTGTTGCTGTCACAGCTGGCAAGAGAGGAGTGGGTGAGAG
AGAGACTTAACTGTATATAACTGAAGAAACTCAAGAACAGAGTNGATCTTGGCAATTGGTGGCGATGGNGGCGGTGGCTC
AATCCTGTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50616.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis