Browse Element(s) Details


Os.50844.1.S1_at

Description gb:AK058952.1
DB_XREF= gi:32968970
TID=Os.50844.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A10, full insert sequence.
FL= gb:AK058952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50844.1.S1_at--1142--2951Chr01:24668765..24668789 (25 bp)
AATGGATGCAATGAGTACCCCTACA
LOC_Os01g42770
Os.50844.1.S1_at--983--6051Chr01:24668777..24668801 (25 bp)
GAGTACCCCTACAAGTTTATTGAGC
LOC_Os01g42770
Os.50844.1.S1_at--736--10411Chr01:24668793..24668817 (25 bp)
TTATTGAGCATGTTTTGGTCGGTTG
LOC_Os01g42770
Os.50844.1.S1_at--218--7811Chr01:24668809..24668833 (25 bp)
GGTCGGTTGTGTACCATACTAGCTC
LOC_Os01g42770
Os.50844.1.S1_at--1093--7431Chr01:24668817..24668841 (25 bp)
GTGTACCATACTAGCTCGCATTATA
LOC_Os01g42770
Os.50844.1.S1_at--241--711Chr01:24668863..24668887 (25 bp)
ATGATTGGCAATATCTAGGTTAGGT
LOC_Os01g42770
Os.50844.1.S1_at--646--991Chr01:24668879..24668903 (25 bp)
AGGTTAGGTAACTCATGGACATGGT
LOC_Os01g42770
Os.50844.1.S1_at--307--7731Chr01:24668914..24668938 (25 bp)
GGTGTAGAGGAACATGAGCTATCAT
LOC_Os01g42770
Os.50844.1.S1_at--944--5911Chr01:24668929..24668953 (25 bp)
GAGCTATCATGTTTATTTGTTCAGT
LOC_Os01g42770
Os.50844.1.S1_at--8--8791Chr01:24668946..24668970 (25 bp)
TGTTCAGTACAATTGTTCCTTGTGA
LOC_Os01g42770
Os.50844.1.S1_at--994--6691Chr01:24668960..24668984 (25 bp)
GTTCCTTGTGATTATGTTCATAACC
LOC_Os01g42770
Target Sequence 
AATGGATGCAATGAGTACCCCTACAAGTTTATTGAGCATGTTTTGGTCGGTTGTGTACCATACTAGCTCGCATTATAGTA
GTAAGTTTGAACCTTGGTATGATTGGCAATATCTAGGTTAGGTAACTCATGGACATGGTGAACAAATGTGGTGTAGAGGA
ACATGAGCTATCATGTTTATTTGTTCAGTACAATTGTTCCTTGTGATTATGTTCATAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis