Browse Element(s) Details


Os.51008.1.S1_at

Description gb:AK060129.1
DB_XREF= gi:32970147
TID=Os.51008.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A10, full insert sequence.
FL= gb:AK060129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3997011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39936NANA10+21057126..21057812Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39940OsAffx.20154.1.S1_at10/1110+21058544..21059714hypothetical protein
LOC_Os10g39940Os.13877.1.S1_at3/1110+21058544..21059714hypothetical protein
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os10g39970Os.51008.1.S1_at11/1110+21077244..21078300Harpin-induced protein 1 containing protein, expressed
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51008.1.S1_at--65--7231Chr10:21077630..21077654 (25 bp)
GTCGCCTCCAGGTACTACCAAGTCA
LOC_Os10g39970
Os.51008.1.S1_at--472--9991Chr10:21077615..21077639 (25 bp)
TACCAAGTCAATGTGACCTGCTCGC
LOC_Os10g39970
Os.51008.1.S1_at--7--2491Chr10:21077549..21077573 (25 bp)
AACAGCGTGCCGTGCGACGTCGAGA
LOC_Os10g39970
Os.51008.1.S1_at--270--4011Chr10:21077532..21077556 (25 bp)
CGTCGAGATCTCGTGAGGCAACCAA
LOC_Os10g39970
Os.51008.1.S1_at--309--8891Chr10:21077519..21077543 (25 bp)
TGAGGCAACCAAATGCATGCATGTT
LOC_Os10g39970
Os.51008.1.S1_at--169--751Chr10:21077499..21077523 (25 bp)
ATGTTTCCGTGTCCGACCAAAGTGA
LOC_Os10g39970
Os.51008.1.S1_at--905--6811Chr10:21077452..21077476 (25 bp)
GTTTATATTTTACAGCACACGATCT
LOC_Os10g39970
Os.51008.1.S1_at--546--1491Chr10:21077439..21077463 (25 bp)
AGCACACGATCTACTATACTTTTGA
LOC_Os10g39970
Os.51008.1.S1_at--626--311Chr10:21077424..21077448 (25 bp)
ATACTTTTGATACGTACTACCTCCG
LOC_Os10g39970
Os.51008.1.S1_at--724--10451Chr10:21077269..21077293 (25 bp)
TTAGCTCTAGTTGGAGTGGCCTTCT
LOC_Os10g39970
Os.51008.1.S1_at--348--8551Chr10:21077258..21077282 (25 bp)
TGGAGTGGCCTTCTTTTCTTCATCA
LOC_Os10g39970
Target Sequence 
GTCGCCTCCAGGTACTACCAAGTCAATGTGACCTGCTCGCCGGTGAACATCGGCTTGTCGCCGTCGGCGGCGCGGTCCTT
CAACAGCGTGCCGTGCGACGTCGAGATCTCGTGAGGCAACCAAATGCATGCATGTTTCCGTGTCCGACCAAAGTGATCGT
TTAGTTTGGATTGGATTTGTTTATATTTTACAGCACACGATCTACTATACTTTTGATACGTACTACCTCCGTTCCAGGTT
ATAAGACTTTCTAATATTATCCACATTCATATATATGTTAATGAATCTAGGCATATATATGTGGGTAATGCTAAAAAGTC
TTATAATATGAAACGGATGAAGTATTTGCGAGGTTGTAAATTTAGCTCTAGTTGGAGTGGCCTTCTTTTCTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis