Browse Element(s) Details


Os.51066.1.S1_at

Description gb:AK060486.1
DB_XREF= gi:32970504
TID=Os.51066.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E10, full insert sequence.
FL= gb:AK060486.1 gb:AK106068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4330411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43304Os.51066.1.S1_at11/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43304OsAffx.21292.1.S1_at1/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43320OsAffx.28078.1.S1_at1/116+26033893..26037159Cytochrome P450 family protein, expressed
LOC_Os06g43330NANA6+26047163..26050103retrotransposon protein, putative, unclassified
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51066.1.S1_at--298--7611Chr06:26027806..26027830 (25 bp)
GGGCAACAACTTCGAGCTCCTTCCG
LOC_Os06g43304
Os.51066.1.S1_at--1071--4271Chr06:26027945..26027969 (25 bp)
CCTGCCAAGCTGGACATGACCGAGA
LOC_Os06g43304
Os.51066.1.S1_at--181--2111Chr06:26027958..26027982 (25 bp)
ACATGACCGAGACGTTGGGCATCAC
LOC_Os06g43304
Os.51066.1.S1_at--1098--3692Chr06:26028046..26028070 (25 bp)
CTAGACGCCGTTGCCAGAATTTCAG
LOC_Os06g43304
Os.51066.1.S1_at--942--1471Chr06:26028061..26028085 (25 bp)
AGAATTTCAGCCATCTGCTCAGCCT
LOC_Os06g43304
Os.51066.1.S1_at--490--9672Chr06:26037193..26037217 (25 bp)
TCAGCCTTCTTTCTTGTGTTACATC
NONE
Os.51066.1.S1_at--434--6772Chr06:26037210..26037234 (25 bp)
GTTACATCTCCTAATCACCGTTATA
NONE
Os.51066.1.S1_at--979--7071Chr06:26028124..26028148 (25 bp)
GTCACCAGTAACACTAATATCGCAA
LOC_Os06g43304
Os.51066.1.S1_at--1067--2451Chr06:26028166..26028190 (25 bp)
AACAAGCCATGTTGTAGCCTCGCTG
LOC_Os06g43304
Os.51066.1.S1_at--507--6971Chr06:26028179..26028203 (25 bp)
GTAGCCTCGCTGTTAAATAAGTGGA
LOC_Os06g43304
Os.51066.1.S1_at--264--5531Chr06:26028219..26028243 (25 bp)
GAAAAGCCGTGGAATTATGCCGCAC
LOC_Os06g43304
Target Sequence 
GGGCAACAACTTCGAGCTCCTTCCGTTCGGCGCCGGGCGGCGGATGTGCCCCGGGATGGCGTTTGCGCTCGCCAACATTG
AGCTCACGCTCGCCAGTCTGCTTTTCCACTTCGACTGGGAGGTGCCCGACATGGCCGACCCTGCCAAGCTGGACATGACC
GAGACGTTGGGCATCACGGCGCGCCGCAAGGGCGACCTCCTGCTACGCCCCGTCCTCCGCATGCCCGTGCCCGGCGTCTA
CTAGACGCCGTTGCCAGAATTTCAGCCATCTGCTCAGCCTTCTTTCTTGTGTTACATCTCCTAATCACCGTTATACAAGT
CACCAGTAACACTAATATCGCAATTATATATGTCAAACACAACAAGCCATGTTGTAGCCTCGCTGTTAAATAAGTGGAGA
AAGAATTGAAGGAGAAAAGCCGTGGAATTATGCCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis