Browse Element(s) Details


Os.51150.1.S1_s_at

Description gb:AK061163.1
DB_XREF= gi:32971181
TID=Os.51150.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A04, full insert sequence.
FL= gb:AK061163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4015011/11AP2 domain-containing transcription factor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40110Os.6079.1.S1_at11/116+23872485..23873728RNA polymerase Rpc34 subunit family protein, expressed
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed
LOC_Os06g40130NANA6+23882434..23882859hypothetical protein
LOC_Os06g40140NANA6+23889744..23890337hypothetical protein
LOC_Os06g40150Os.51150.1.S1_s_at11/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40150Os.51150.1.S1_at8/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40160OsAffx.16020.1.S1_at11/116+23899372..23902111hypothetical protein
LOC_Os06g40170Os.50455.1.S1_at11/116+23907921..23912799Phospholipase D alpha 2, putative, expressed
LOC_Os06g40180Os.50104.1.S1_at11/116+23920943..23923922Phospholipase D alpha 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51150.1.S1_s_at--1084--1511Chr06:23897825..23897849 (25 bp)
AGCAGCAACAGCAGTGTCGTCCAGC
LOC_Os06g40150
Os.51150.1.S1_s_at--940--1651Chr06:23897796..23897820 (25 bp)
AGCCGACTCCGAGTGACAGCACAGT
LOC_Os06g40150
Os.51150.1.S1_s_at--1009--1491Chr06:23897779..23897803 (25 bp)
AGCACAGTCACAACGACGTCCACGT
LOC_Os06g40150
Os.51150.1.S1_s_at--470--1711Chr06:23897732..23897756 (25 bp)
ACCACCTCCGGCAATGGACGACGAG
LOC_Os06g40150
Os.51150.1.S1_s_at--871--2411Chr06:23897563..23897587 (25 bp)
AAAACAGCATGATCAGGTCACCATC
LOC_Os06g40150
Os.51150.1.S1_s_at--242--7871Chr06:23897477..23897501 (25 bp)
GGTATATCTCTATTACTACTACATA
LOC_Os06g40150
Os.51150.1.S1_s_at--108--9771Chr06:23897428..23897452 (25 bp)
TAAGATCGATTACTACTGTGTGAAG
LOC_Os06g40150
Os.51150.1.S1_s_at--460--10751Chr06:23897375..23897399 (25 bp)
TTGTATGTACAAGACGTCCCCGTCA
LOC_Os06g40150
Os.51150.1.S1_s_at--886--7231Chr06:23897360..23897384 (25 bp)
GTCCCCGTCATTATAGTCATACTGG
LOC_Os06g40150
Os.51150.1.S1_s_at--363--271Chr06:23897348..23897372 (25 bp)
ATAGTCATACTGGTGAAAGCTCTGC
LOC_Os06g40150
Os.51150.1.S1_s_at--712--2351Chr06:23897333..23897357 (25 bp)
AAAGCTCTGCTATGTATCAACGTCA
LOC_Os06g40150
Target Sequence 
AGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACAGCACAGTCACAACGACGTCCACGTCCACCACGG
GCTCGCCGTCGCCACCACCTCCGGCAATGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGG
AGCGGCCCGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTAGCCTCGTCATCTGAATTCCGGAAGAACAGGA
AAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATCTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCA
CAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAA
GATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATA
GTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51150.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis