Browse Element(s) Details


OsAffx.16020.1.S1_at

Description tigr:9634.m05027
TID=OsAffx.16020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed
LOC_Os06g40130NANA6+23882434..23882859hypothetical protein
LOC_Os06g40140NANA6+23889744..23890337hypothetical protein
LOC_Os06g40150Os.51150.1.S1_s_at11/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40150Os.51150.1.S1_at8/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40160OsAffx.16020.1.S1_at11/116+23899372..23902111hypothetical protein
LOC_Os06g40170Os.50455.1.S1_at11/116+23907921..23912799Phospholipase D alpha 2, putative, expressed
LOC_Os06g40180Os.50104.1.S1_at11/116+23920943..23923922Phospholipase D alpha 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16020.1.S1_at--898--8651Chr06:23899402..23899426 (25 bp)
TGTGGCGAGCGGCATAACCACCTTC
LOC_Os06g40160
OsAffx.16020.1.S1_at--504--9951Chr06:23899435..23899733 (25 bp)
TACGCCGGTACAAACACTGAAGCTT
LOC_Os06g40160
OsAffx.16020.1.S1_at--925--5391Chr06:23899727..23899751 (25 bp)
GAAGCTTGGACAGTGTGTACTACTC
LOC_Os06g40160
OsAffx.16020.1.S1_at--1160--2951Chr06:23899756..23899780 (25 bp)
AATGGACTTGATGGGCGTTCGTAAC
LOC_Os06g40160
OsAffx.16020.1.S1_at--197--4931Chr06:23901589..23901613 (25 bp)
GCTTGCTCTTTGTCAGCCTGGCAGA
LOC_Os06g40160
OsAffx.16020.1.S1_at--30--8271Chr06:23901608..23901775 (25 bp)
GGCAGACTGCAAGGTTTCACATTTT
LOC_Os06g40160
OsAffx.16020.1.S1_at--676--6311Chr06:23901831..23901855 (25 bp)
GATGACGATGATCAGACCTGCCACA
LOC_Os06g40160
OsAffx.16020.1.S1_at--92--1331Chr06:23901994..23902016 (23 bp)
AGAGGAGTTAATCCCCTTGCTAATC
LOC_Os06g40160
OsAffx.16020.1.S1_at--916--3031Chr06:23902013..23902037 (25 bp)
AATCCTGTTCCCGTGCAACTAGAAG
LOC_Os06g40160
OsAffx.16020.1.S1_at--649--2531Chr06:23902029..23902053 (25 bp)
AACTAGAAGGCACTGTCTGGCCAGT
LOC_Os06g40160
OsAffx.16020.1.S1_at--1142--8571Chr06:23902053..23902077 (25 bp)
TGGTTAGTGATCACTCCCTTGCCAA
LOC_Os06g40160
Target Sequence 
TGTGGCGAGCGGCATAACCACCTTCTCTGCCAGTACGCCGGTACAAACACTGAAGCTTGGACAGTGTGTACTACTCCAGA
AATGGACTTGATGGGCGTTCGTAACCAAGGGCTGCTTGCTCTTTGTCAGCCTGGCAGACTGCAAGGTTTCACATTTTTGC
AGGTAAACGGTGGGGGCAAGTCCGAGTTGGGCGGCTTTGGTTACAGGAAACGGATGACGATGATCAGACCTGCCACACCT
CTGTCAGAAACAAAGTCCACAAGAGGAGTTAATCCCCTTGCTAATCCTGTTCCCGTGCAACTAGAAGGCACTGTCTGGCC
AGTGGTTAGTGATCACTCCCTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis