Browse Element(s) Details


Os.51293.1.S1_at

Description gb:AK062446.1
DB_XREF= gi:32972464
TID=Os.51293.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B06, full insert sequence.
FL= gb:AK062446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1272011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein
LOC_Os09g12690NANA9+7264424..7266380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12710Os.21026.1.S1_at11/119+7270228..7275920THO complex subunit 3, putative, expressed
LOC_Os09g12720Os.51293.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12720Os.51930.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12730Os.53930.1.S1_at11/119+7292011..7299542RNA recognition motif family protein, expressed
LOC_Os09g12740NANA9+7305638..7306849retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51293.1.S1_at--79--651Chr09:7280962..7280986 (25 bp)
ATGCATTCTCTCTCTACATTTCATA
LOC_Os09g12720
Os.51293.1.S1_at--707--2771Chr09:7280879..7280903 (25 bp)
AAGAGTCCAGCTACCCAAAATGCCT
LOC_Os09g12720
Os.51293.1.S1_at--174--7751Chr09:7280833..7280857 (25 bp)
GGTGTTTCTTCCCAGTTGGTAGATG
LOC_Os09g12720
Os.51293.1.S1_at--566--7671Chr09:7280739..7280763 (25 bp)
GGGATTTTGTTTTCACCATCAATGT
LOC_Os09g12720
Os.51293.1.S1_at--261--6911Chr09:7280716..7280740 (25 bp)
GTATCGGTTTCTGGTTGTTCTTGGC
LOC_Os09g12720
Os.51293.1.S1_at--32--6751Chr09:7280700..7280724 (25 bp)
GTTCTTGGCTTTCAGTTTCTTGCTA
LOC_Os09g12720
Os.51293.1.S1_at--535--3631Chr09:7280682..7280706 (25 bp)
CTTGCTATGTTTTGGGACTGGGCAT
LOC_Os09g12720
Os.51293.1.S1_at--887--5731Chr09:7280667..7280691 (25 bp)
GACTGGGCATTTTTTGTCTCTCTAC
LOC_Os09g12720
Os.51293.1.S1_at--407--9511Chr09:7280649..7280673 (25 bp)
TCTCTACTACCATCTGCAGGTGATT
LOC_Os09g12720
Os.51293.1.S1_at--804--6531Chr09:7280628..7280652 (25 bp)
GATTTTCAAGTTCCTTTCCTTCTAG
LOC_Os09g12720
Os.51293.1.S1_at--196--2391Chr09:7280598..7280622 (25 bp)
AAACTCAATGAGCTGTCACTGCCTG
LOC_Os09g12720
Target Sequence 
ATGCATTCTCTCTCTACATTTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCTTA
AGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTTTGGGGTGTTTCTTCCCAGTTGGTAGATGTTCAAG
ATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTTTTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACC
ATCAATGTATCGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGACTGGGCATTTTTTGTCTCTCTAC
TACCATCTGCAGGTGATTTTCAAGTTCCTTTCCTTCTAGCAGTAAAACTCAATGAGCTGTCACTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis