Browse Element(s) Details


Os.5176.1.S1_at

Description gb:AK064302.1
DB_XREF= gi:32974320
TID=Os.5176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B04, full insert sequence.
FL= gb:AK064302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4347010/11chloroplast outer membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified
LOC_Os05g43440Os.22455.1.A1_at9/115+25171607..25176541Single-strand binding protein family protein, expressed
LOC_Os05g43450Os.53504.1.S1_at11/115+25177479..25180516Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os05g43460Os.14885.1.S1_at9/115+25183001..25184001expressed protein
LOC_Os05g43470Os.5176.1.S1_at10/115+25184696..25189013chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0010006cellular_componentToc complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5176.1.S1_at--1002--3871NONE
CTGGTAATCCAGCTCTTCGACAAGG
NONE
Os.5176.1.S1_at--1095--2271Chr05:25185157..25185181 (25 bp)
AAATCCGAGTCGACTATGCTATGAA
LOC_Os05g43470
Os.5176.1.S1_at--598--2131Chr05:25185097..25185121 (25 bp)
ACAGTGGTGGCGGTTCATAGATTAT
LOC_Os05g43470
Os.5176.1.S1_at--352--9791Chr05:25185010..25185034 (25 bp)
TAAGATGGACACAAACCCTTCTTTT
LOC_Os05g43470
Os.5176.1.S1_at--375--7311Chr05:25184971..25184995 (25 bp)
GTGCTGACATAAGCCGGTGGTTCTA
LOC_Os05g43470
Os.5176.1.S1_at--1083--7871Chr05:25184953..25184977 (25 bp)
GGTTCTAACTTGTGACTTCTGGCAG
LOC_Os05g43470
Os.5176.1.S1_at--965--1351Chr05:25184930..25184954 (25 bp)
AGACCCCTAGATCAGTAGACCCAGT
LOC_Os05g43470
Os.5176.1.S1_at--131--1391Chr05:25184914..25184938 (25 bp)
AGACCCAGTGGGTGTTCCAAACATG
LOC_Os05g43470
Os.5176.1.S1_at--1022--10711Chr05:25184876..25184900 (25 bp)
TTGCATGTTTGTGCCAGCATTCGGA
LOC_Os05g43470
Os.5176.1.S1_at--229--6271Chr05:25184837..25184861 (25 bp)
GATGTGTGCCTTTTGTATTTTCTCC
LOC_Os05g43470
Os.5176.1.S1_at--880--8931Chr05:25184739..25184763 (25 bp)
TGACGCTTCTCATGATCTTATTCTT
LOC_Os05g43470
Target Sequence 
CTGGTAATCCAGCTCTTCGACAAGGAAAACCGGGATTTGGTGTTGGATTTGGATATGGAATCCACTTTAACACAGNCCTT
GNTCAAATCCGAGTCGACTATGCTATGAATGCCTTCAGTCGCAAGNCGATCTACTTCGGTATCNAACAGTGGTGGCGGTT
CATAGATTATGAATACAGAGGATTCACATAGCATAGAATTGGCAGTTTGGCACTCAAATTGATTCTTTGCCATAAGATGG
ACACAAACCCTTCTTTTTTCCATTTCAACTAGTGCTGACATAAGCCGGTGGTTCTAACTTGTGACTTCTGGCAGACCCCT
AGATCAGTAGACCCAGTGGGTGTTCCAAACATGCCACCGAAATCATTTGCATGTTTGTGCCAGCATTCGGAAGCTGTACA
GTTGAGATGTGTGCCTTTTGTATTTTCTCCTGTTTGGAGATTGAACAGATGGGCCATAAGATAGACATGCACGAACAGCA
ANCCCTGTGAGATGTGGAAATTTTGACGCTTCTCATGATCTTATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis