Browse Element(s) Details


Os.51802.1.S1_at

Description gb:AK063748.1
DB_XREF= gi:32973766
TID=Os.51802.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G07, full insert sequence.
FL= gb:AK063748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3764011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37600OsAffx.14996.1.S1_at11/115+21922087..21925411Acyltransferase family protein, expressed
LOC_Os05g37610NANA5+21929385..21929915hypothetical protein
LOC_Os05g37620Os.46012.2.S1_x_at7/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.27088.1.A1_x_at4/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.46012.3.S1_x_at2/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37630OsAffx.4547.1.S1_at11/115+21939850..21940554hypothetical protein
LOC_Os05g37640Os.51802.1.S1_at11/115+21947505..21948151expressed protein
LOC_Os05g37650OsAffx.30938.1.S1_at2/115+21955043..21955417hypothetical protein
LOC_Os05g37660Os.18463.1.S1_at11/115+21956892..21958778AER, putative, expressed
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51802.1.S1_at--487--1531Chr05:21947704..21947728 (25 bp)
AGCAGTGTGCACGTGGCTAACGACG
LOC_Os05g37640
Os.51802.1.S1_at--739--5091Chr05:21947712..21947736 (25 bp)
GCACGTGGCTAACGACGATGACGAC
LOC_Os05g37640
Os.51802.1.S1_at--248--8911Chr05:21947756..21947780 (25 bp)
TGAGCAGCATGCACGCGGCCGATAA
LOC_Os05g37640
Os.51802.1.S1_at--605--651Chr05:21947764..21947788 (25 bp)
ATGCACGCGGCCGATAATGACGACG
LOC_Os05g37640
Os.51802.1.S1_at--657--7951Chr05:21948022..21948046 (25 bp)
GGATCTGGATCCATGGTTAGGGTTT
LOC_Os05g37640
Os.51802.1.S1_at--328--6371Chr05:21948029..21948053 (25 bp)
GATCCATGGTTAGGGTTTGTGTTTT
LOC_Os05g37640
Os.51802.1.S1_at--883--8771Chr05:21948080..21948104 (25 bp)
TGTTTTCCCGTGCAGGCGGCATAAT
LOC_Os05g37640
Os.51802.1.S1_at--33--4011Chr05:21948088..21948112 (25 bp)
CGTGCAGGCGGCATAATTTTTGCGT
LOC_Os05g37640
Os.51802.1.S1_at--104--311Chr05:21948100..21948124 (25 bp)
ATAATTTTTGCGTGCGGTTGCGCCA
LOC_Os05g37640
Os.51802.1.S1_at--185--10291Chr05:21948106..21948130 (25 bp)
TTTGCGTGCGGTTGCGCCACCAGCA
LOC_Os05g37640
Os.51802.1.S1_at--924--3371Chr05:21948123..21948147 (25 bp)
CACCAGCACAAGAAAATCGCGATTT
LOC_Os05g37640
Target Sequence 
AGCAGTGTGCACGTGGCTAACGACGATGACGACGGCAGCGAGGCGGCGGCCGTGAGCAGCATGCACGCGGCCGATAATGA
CGACGAGGCGGTAGCCGGAAGTGGCGTGCGCATGACGACGACGACGGCGGCAAGGAGGCGGTCGGGAGCGGGCTGACGAT
GTGTGCCGGGAGTGGGAGGAGGCGGCGGTCAGCAGCGTGCACGCGGCCGATGACGACGACGACGGCCAGGCAGCGGCCGG
GATCGGTGCCGCCCTCCCCACGCCCGAATCCGGCGGCGGTGGCAGTCTCCCACCCGGATCCAGCGACGGTGGGGTGCCGG
ATCTGGATCCATGGTTAGGGTTTGTGTTTTTTGAAAATTTATTTTTTTTCGGTTTTTGTTTTCCCGTGCAGGCGGCATAA
TTTTTGCGTGCGGTTGCGCCACCAGCACAAGAAAATCGCGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis