Browse Element(s) Details


OsAffx.14996.1.S1_at

Description tigr:9633.m03474
TID=OsAffx.14996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3760011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37550OsAffx.31018.3.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550OsAffx.31018.2.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550Os.50578.1.S1_x_at7/115+21896902..21901449hypothetical protein
LOC_Os05g37560NANA5+21902727..21904076hypothetical protein
LOC_Os05g37570Os.47130.4.A1_x_at4/115+21904606..21904887retrotransposon protein, putative, unclassified
LOC_Os05g37580Os.28943.1.S1_x_at1/115+21905798..21909014retrotransposon protein, putative, unclassified
LOC_Os05g37590NANA5+21909634..21915256retrotransposon protein, putative, unclassified
LOC_Os05g37600OsAffx.14996.1.S1_at11/115+21922087..21925411Acyltransferase family protein, expressed
LOC_Os05g37610NANA5+21929385..21929915hypothetical protein
LOC_Os05g37620Os.46012.2.S1_x_at7/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.27088.1.A1_x_at4/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.46012.3.S1_x_at2/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37630OsAffx.4547.1.S1_at11/115+21939850..21940554hypothetical protein
LOC_Os05g37640Os.51802.1.S1_at11/115+21947505..21948151expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14996.1.S1_at--271--4731Chr05:21924895..21924919 (25 bp)
GCTGGGCCGCAAGGTGATCTGCGTC
LOC_Os05g37600
OsAffx.14996.1.S1_at--776--7091Chr05:21924917..21924941 (25 bp)
GTCACGTACAGCGTCCCTCGGAAAA
LOC_Os05g37600
OsAffx.14996.1.S1_at--192--7231Chr05:21924929..21924953 (25 bp)
GTCCCTCGGAAAACGTACGGCATGA
LOC_Os05g37600
OsAffx.14996.1.S1_at--504--2371Chr05:21924939..21924963 (25 bp)
AAACGTACGGCATGAGCTCCAGGCT
LOC_Os05g37600
OsAffx.14996.1.S1_at--1137--9311Chr05:21925170..21925194 (25 bp)
TCGCCACCAGGGAGACCATGTTCCA
LOC_Os05g37600
OsAffx.14996.1.S1_at--889--3331Chr05:21925201..21925225 (25 bp)
CACGGCGCGCGGGTTTAAGGGCATG
LOC_Os05g37600
OsAffx.14996.1.S1_at--948--10291Chr05:21925214..21925238 (25 bp)
TTTAAGGGCATGGACCCTTACTTCT
LOC_Os05g37600
OsAffx.14996.1.S1_at--600--6151Chr05:21925265..21925289 (25 bp)
GAGGTCACGTTCCTGAGCCAGCTGC
LOC_Os05g37600
OsAffx.14996.1.S1_at--990--1691Chr05:21925280..21925304 (25 bp)
AGCCAGCTGCCGAGTGAGCTCACCT
LOC_Os05g37600
OsAffx.14996.1.S1_at--401--1591Chr05:21925284..21925308 (25 bp)
AGCTGCCGAGTGAGCTCACCTCCGG
LOC_Os05g37600
OsAffx.14996.1.S1_at--1032--4371Chr05:21925338..21925362 (25 bp)
CCAACTACGTGCAGAAGGCGCTCGC
LOC_Os05g37600
Target Sequence 
GCTGGGCCGCAAGGTGATCTGCGTCACGTACAGCGTCCCTCGGAAAACGTACGGCATGAGCTCCAGGCTCCCGGAGGCGC
TCACGGCCTCGCCGGTCAAGGCCGCCGTCGCGCTGTGCAGGGAGCGCGACAGGGACGCGGACCGTGTCCGGCGGCTGCTG
GAGGAGGGCGTCGACATCGTCGCCTTCCCCGAGGGCACCACCTGCCGAGGGGCGTTCCTGCTGCGGTTCAGCTCGCTGTT
CGCCGAGCTCACCGACCGCATCGTGCCGGTGGCCATCGCCACCAGGGAGACCATGTTCCACGGCTCCACGGCGCGCGGGT
TTAAGGGCATGGACCCTTACTTCTTCTTCATGAACCCGCGGCCGGCGTACGAGGTCACGTTCCTGAGCCAGCTGCCGAGT
GAGCTCACCTCCGGCGGCGGCGGCAAGTCGCCGGTCGAGGTGGCCAACTACGTGCAGAAGGCGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis