Browse Element(s) Details


Os.51930.1.S1_at

Description gb:AK064311.1
DB_XREF= gi:32974329
TID=Os.51930.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C03, full insert sequence.
FL= gb:AK064311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1272011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein
LOC_Os09g12690NANA9+7264424..7266380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12710Os.21026.1.S1_at11/119+7270228..7275920THO complex subunit 3, putative, expressed
LOC_Os09g12720Os.51293.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12720Os.51930.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12730Os.53930.1.S1_at11/119+7292011..7299542RNA recognition motif family protein, expressed
LOC_Os09g12740NANA9+7305638..7306849retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51930.1.S1_at--648--5831Chr09:7276814..7276838 (25 bp)
GACCTGGTGTCGGACTGCGGCTTCA
LOC_Os09g12720
Os.51930.1.S1_at--984--9131Chr09:7276799..7276823 (25 bp)
TGCGGCTTCATACTTGTTGGCTATA
LOC_Os09g12720
Os.51930.1.S1_at--126--1411Chr09:7276711..7276735 (25 bp)
AGAAAGGCGATAACCGGTACTGCGG
LOC_Os09g12720
Os.51930.1.S1_at--363--3831Chr09:7276635..7276659 (25 bp)
CTGCGCCGAGAGATGGGACTACCTT
LOC_Os09g12720
Os.51930.1.S1_at--138--8131Chr09:7276620..7276644 (25 bp)
GGACTACCTTGATCCGTTCATGGCG
LOC_Os09g12720
Os.51930.1.S1_at--1008--4691Chr09:7276596..7276620 (25 bp)
GCGGCGATGGGCGAAGCATTTCAAT
LOC_Os09g12720
Os.51930.1.S1_at--745--9651Chr09:7276521..7276545 (25 bp)
TCAGCTCAGCAAGTCTGGTTTACCA
LOC_Os09g12720
Os.51930.1.S1_at--829--8571Chr09:7276506..7276530 (25 bp)
TGGTTTACCAGTTTGACAGCATATG
LOC_Os09g12720
Os.51930.1.S1_at--674--9511Chr09:7276451..7276475 (25 bp)
TCTCTTAACATTCCTGCAAGCATCT
LOC_Os09g12720
Os.51930.1.S1_at--573--4891Chr09:7276403..7276427 (25 bp)
GCTTTTTTGGCTTTTGTTGTGGATC
LOC_Os09g12720
Os.51930.1.S1_at--1052--2931Chr09:7276325..7276349 (25 bp)
AAGGCTTTCTGTTCTCAATCTGTAT
LOC_Os09g12720
Target Sequence 
GACCTGGTGTCGGACTGCGGCTTCATACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGG
CGAAGTCGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGGTCTGAGTATCGGCG
GTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGATCCGTTCATGGCGCGGCGATGGGCGAAGCATTTC
AATGTGTATAGGGCCTGAGTTAAAAAGAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGT
TTGACAGCATATGATTCTTGTTGGNTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAG
AGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGC
AATGTGCACAAGGCTTTCTGTTCTCAATCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis