Browse Element(s) Details


Os.52020.1.S1_at

Description gb:AK064544.1
DB_XREF= gi:32974562
TID=Os.52020.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B02, full insert sequence.
FL= gb:AK064544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1201011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11990OsAffx.30939.1.S1_at10/1111+6651445..6659250NB-ARC domain containing protein, expressed
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed
LOC_Os11g12010Os.52020.1.S1_at11/1111+6681134..6683109expressed protein
LOC_Os11g12020NANA11+6685754..6686150NBS-LRR type disease resistance protein, putative
LOC_Os11g12030OsAffx.18813.1.S1_at11/1111+6687915..6689380hypothetical protein
LOC_Os11g12040OsAffx.7091.1.S1_at8/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12040Os.12614.1.A1_at1/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12050Os.54085.1.S1_at11/1111+6698615..6704342NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12060OsAffx.22947.1.S1_x_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12060Os.8606.1.S1_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52020.1.S1_at--98--2191Chr11:6681710..6681734 (25 bp)
ACACAGCGAGCGTCTGCTTTGCAAG
LOC_Os11g12010
Os.52020.1.S1_at--1160--2511Chr11:6681661..6681685 (25 bp)
AACTTTGCCCAAGAAATCCTCTCAA
LOC_Os11g12010
Os.52020.1.S1_at--789--4591Chr11:6681422..6681446 (25 bp)
GCGAAGCAGATTTTGTCTCCAATGA
LOC_Os11g12010
Os.52020.1.S1_at--59--2991Chr11:6681402..6681426 (25 bp)
AATGATTCCACTGCCAAGGCCGATG
LOC_Os11g12010
Os.52020.1.S1_at--396--6971Chr11:6681367..6681391 (25 bp)
GTAGCTGCCATGTCTTTCGATGTAC
LOC_Os11g12010
Os.52020.1.S1_at--294--10631Chr11:6681337..6681361 (25 bp)
TTCGTCTGCTTGTTAGTGATCCTGA
LOC_Os11g12010
Os.52020.1.S1_at--431--791Chr11:6681311..6681335 (25 bp)
ATGTGTATCTGTCACCTATCGGAGC
LOC_Os11g12010
Os.52020.1.S1_at--760--8411Chr11:6681263..6681287 (25 bp)
GGCCTTTTAAAGCATATCCACCTCA
LOC_Os11g12010
Os.52020.1.S1_at--940--3011Chr11:6681239..6681263 (25 bp)
AATGCTAGCTGTGTTTCTTCCAGTT
LOC_Os11g12010
Os.52020.1.S1_at--247--1211Chr11:6681218..6681242 (25 bp)
AGTTTACCTGGTTGTGTTTCTGCTA
LOC_Os11g12010
Os.52020.1.S1_at--804--6451Chr11:6681154..6681178 (25 bp)
GATAATGTAGCCCTGTTCAATTGGA
LOC_Os11g12010
Target Sequence 
ACACAGCGAGCGTCTGCTTTGCAAGCGTCGTGCTGGCGCGAAGCTTGAAAACTTTGCCCAAGAAATCCTCTCAAAGAAAT
TTGGTATCATTGATGAATCTGCTTCTTTTGATGATAACATTAAAAAGTTGTATTTACAGCGGTACAAGAAGCCTCTCTCG
CCAGCATCACTGAAGATAATCGCCGACTTGGTTGAAAAGGGAGGGTGCAAGACGATCGGGATGAAGAATTTGAAGAAAAA
TGCGGCAGTGGCGCCCCTGTGACTGCCTCCGACCGGCTTACAGTTCAAGCGAAGCAGATTTTGTCTCCAATGATTCCACT
GCCAAGGCCGATGTCCCCCGAGTGTAGCTGCCATGTCTTTCGATGTACTCTGTTTCGTCTGCTTGTTAGTGATCCTGAAA
TGTGTATCTGTCACCTATCGGAGCCCCGTTTCGGCTCTGTCTCACCCGGCCTTTTAAAGCATATCCACCTCAATGCTAGC
TGTGTTTCTTCCAGTTTACCTGGTTGTGTTTCTGCTATGCGGAGTGTGTTTAGATGCTTTTTAGATTATGTCACAAGATA
ATGTAGCCCTGTTCAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis