Browse Element(s) Details


OsAffx.30939.1.S1_at

Description tigr:9639.m01145
TID=OsAffx.30939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1199010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein
LOC_Os11g11990OsAffx.30939.1.S1_at10/1111+6651445..6659250NB-ARC domain containing protein, expressed
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed
LOC_Os11g12010Os.52020.1.S1_at11/1111+6681134..6683109expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30939.1.S1_at--142--7291Chr11:6657924..6657948 (25 bp)
GTGCCTTTCATCAACTAATCTAACT
LOC_Os11g11990
OsAffx.30939.1.S1_at--888--9951Chr11:6657983..6658007 (25 bp)
TACCCTGCTTGCTTTATCTCAAACT
LOC_Os11g11990
OsAffx.30939.1.S1_at--313--3091Chr11:6658013..6658037 (25 bp)
AATACAACCTTGTGGGCTTCGTCAT
LOC_Os11g11990
OsAffx.30939.1.S1_at--913--9031Chr11:6658061..6658085 (25 bp)
TGCAGCGCCTATGTCTAGTGGTGGA
LOC_Os11g11990
OsAffx.30939.1.S1_at--157--7731Chr11:6658080..6658104 (25 bp)
GGTGGAGAGTCCTAATCCTATCCTA
LOC_Os11g11990
OsAffx.30939.1.S1_at--551--5391Chr11:6658120..6658144 (25 bp)
GAAGCTTTGCCAGAACTTGTTTCAC
LOC_Os11g11990
OsAffx.30939.1.S1_at--394--2071Chr11:6658134..6658158 (25 bp)
ACTTGTTTCACTTCACCTGCTTTGT
LOC_Os11g11990
OsAffx.30939.1.S1_at--230--4451Chr11:6658163..6658187 (25 bp)
GCCTTGGTGATCTTGCTGGCATTAA
LOC_Os11g11990
OsAffx.30939.1.S1_at--469--6671Chr11:6658216..6658240 (25 bp)
GTTGCTCTTGATTCAGCTATCAGTA
LOC_Os11g11990
OsAffx.30939.1.S1_at--801--2471NONE
AACACTGGGTGTACGATTCTCAGAA
NONE
OsAffx.30939.1.S1_at--115--2411Chr11:6659115..6659139 (25 bp)
AAACAGGGCCTTTGTCTTGGCACCG
LOC_Os11g11990
Target Sequence 
GTGCCTTTCATCAACTAATCTAACTGGGAGTGATTTATCAGGATCAGGCCTGGGTGATCTACCCTGCTTGCTTTATCTCA
AACTGGTAGAATACAACCTTGTGGGCTTCGTCATTAAAAAAGGGGATTACCCAGTCCTGCAGCGCCTATGTCTAGTGGTG
GAGAGTCCTAATCCTATCCTACCTAAAATCGAAGAGGAAGCTTTGCCAGAACTTGTTTCACTTCACCTGCTTTGTGTGCG
CCTTGGTGATCTTGCTGGCATTAATATTAGAAACCACACAAATCTCCAGGAAGTTGCTCTTGATTCAGCTATCAGTATGG
AAACCATAATTACTTGGGAAAATGAAGCTCGGAAGCACCCAAAAAGACCCAAGGTTTTGTTCTTCAAAAGGGTTGGCACA
CCCAACACTGGGTGTACGATTCTCAGAAGCTGTGGCCTGTTTGGAACAGCTTCTAGTAGAAACAGCTTTTGGGAAAAGCT
GCAGCTGGGACAAACTCCCCCAAACAGGGCCTTTGTCTTGGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis