Browse Element(s) Details


Os.21562.1.S1_at

Description gb:AF456245.1
DB_XREF= gi:22652527
GEN=YR5
TID=Os.21562.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21562 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR5) mRNA, complete cds.
PROD=NBS-LRR-like protein
FL= gb:AF456245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g119505/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein
LOC_Os11g11990OsAffx.30939.1.S1_at10/1111+6651445..6659250NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21562.1.S1_at--723--1271Chr11:6627758..6627782 (25 bp)
AGATCCACTAGGGATGCTCGCTTCG
LOC_Os11g11950
Os.21562.1.S1_at--705--4951Chr11:6627734..6627758 (25 bp)
GCATTTGCCGAACCTCACTTATTTG
LOC_Os11g11950
Os.21562.1.S1_at--1086--2891Chr11:6627575..6627599 (25 bp)
AAGGTTTGTACGTTGTGTCACTCTC
LOC_Os11g11950
Os.21562.1.S1_at--543--7451Chr11:6627561..6627585 (25 bp)
GTGTCACTCTCAAAGCTGGATATAG
LOC_Os11g11950
Os.21562.1.S1_at--91--9471Chr11:6627497..6627521 (25 bp)
TCTGGCTTCTGTACCTGCACAGGGA
LOC_Os11g11950
Os.21562.1.S1_at--371--4991Chr11:6627427..6627451 (25 bp)
GCATGTTCCAGAGATTCGTGTTTAG
NONE
Os.21562.1.S1_at--478--10431Chr11:6627406..6627430 (25 bp)
TTAGAACTTTAGATGCGGCTGGCTG
NONE
Os.21562.1.S1_at--978--10271Chr11:6627352..6627376 (25 bp)
TTTGCAGCAGGTGTCGATTTCCGAT
NONE
Os.21562.1.S1_at--1081--6291Chr11:6627330..6627354 (25 bp)
GATGAGTTGCCTATCATTCCTAGCT
NONE
Os.21562.1.S1_at--331--71Chr11:6627315..6627339 (25 bp)
ATTCCTAGCTTTTTTGCGTTCGCGG
NONE
Os.21562.1.S1_at--1046--4671Chr11:6627294..6627318 (25 bp)
GCGGTGCCTCTGTACATTATGTGTA
NONE
Target Sequence 
AGATCCACTAGGGATGCTCGCTTCGCATTTGCCGAACCTCACTTATTTGAGACTGAACAACATGCATAGTGCAAACATTT
TGGTTCTTTCTNCAGTCTTTTCCCCACCTGAAGACACTTGTCTTAAAGCACATGCCCAATGTGAACCAGCTAAAGATCAT
GGATGGGGCACTTCCATCCATTGAAGGTTTGTACGTTGTGTCACTCTCAAAGCTGGATATAGTCCCTGAGGGCATTGAGT
CCCTTCGGACCCTGAAGAAGCTCTGGCTTCTGTACCTGCACAGGGACTTCAAAACTCAATGGCACAAAAACAGAATGCAT
CAGAAGATGCNGCATGTTCCAGAGATTCGTGTTTAGAACTTTAGATGCGGCTGGCTGGTGCCGTTTGTAGTTTTTTTCCC
CCTCTGTTTGCAGCAGGTGTCGATTTCCGATGAGTTGCCTATCATTCCTAGCTTTTTTGCGTTCGCGGTGCCTCTGTACA
TTATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis