Browse Element(s) Details


Os.56301.1.S1_at

Description gb:AK109807.1
DB_XREF= gi:32995016
TID=Os.56301.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G05, full insert sequence.
FL= gb:AK109807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1192011/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11860NANA11+6577193..6580304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11870Os.49724.1.A1_at1/1111+6583989..6585195hypothetical protein
LOC_Os11g11880OsAffx.24795.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11880OsAffx.8098.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11890OsAffx.18809.1.S1_at11/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11890Os.31112.3.S1_at1/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11900OsAffx.18810.1.S1_at10/1111+6599820..6601191hypothetical protein
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56301.1.S1_at--1077--6611Chr11:6602406..6602430 (25 bp)
GTTGGTCTGGCAGCGGGATATATAC
LOC_Os11g11920
Os.56301.1.S1_at--309--4671Chr11:6602394..6602418 (25 bp)
GCGGGATATATACGGCACGCCCAGC
LOC_Os11g11920
Os.56301.1.S1_at--1050--1671Chr11:6602372..6602396 (25 bp)
AGCCTCCTAGGCGTCGGATTTGAAG
LOC_Os11g11920
Os.56301.1.S1_at--48--4571Chr11:6602269..6602293 (25 bp)
GCGCGCGAAGACCTCCTTGCAGGTA
LOC_Os11g11920
Os.56301.1.S1_at--396--11Chr11:6602249..6602273 (25 bp)
AGGTACCTCCCTATGGTGGTCAGCG
LOC_Os11g11920
Os.56301.1.S1_at--19--1711Chr11:6602221..6602245 (25 bp)
ACCACAACCAAACCAGCCATTGATG
LOC_Os11g11920
Os.56301.1.S1_at--623--1711Chr11:6602138..6602162 (25 bp)
ACCACAGGCTCCGAGGATGGGACGA
LOC_Os11g11920
Os.56301.1.S1_at--674--5871Chr11:6602089..6602113 (25 bp)
GAGCCGACGCCTGTAGATATTTTGT
LOC_Os11g11920
Os.56301.1.S1_at--227--9511Chr11:6602035..6602059 (25 bp)
TCTCGCATTTTGCAGCATGAGCCTG
LOC_Os11g11920
Os.56301.1.S1_at--778--4271Chr11:6602014..6602038 (25 bp)
CCTGCTTCACCATACCCAATTTTTT
LOC_Os11g11920
Os.56301.1.S1_at--934--6891Chr11:6601949..6601973 (25 bp)
GTATCAAATTGCAATCCAGTGGAGT
LOC_Os11g11920
Target Sequence 
GTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTCGGATTTGAAGGAAGGCGAGATAAGGGAAGAC
GGGCGACGGCGCGCGGCATGCGGCGTCTGCTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGG
TACCTCCCTATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGGACGGACGGACG
GACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGGACGAGCTCCTGCGGCTGCGGCAACAGGAGAG
CCGACGCCTGTAGATATTTTGTTTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTC
ACCATACCCAATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGCAATCCAGTGGA
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis