Browse Element(s) Details


Os.49724.1.A1_at

Description gb:AK107553.1
DB_XREF= gi:32992762
TID=Os.49724.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A12, full insert sequence.
FL= gb:AK107553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2490011/11expressed protein
LOC_Os11g118701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24830NANA5+14314604..14315755hypothetical protein
LOC_Os05g24840Os.46995.1.S1_x_at2/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24840Os.46995.1.S1_at1/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24850NANA5+14321675..14324116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24860NANA5+14324236..14327139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24870NANA5+14327682..14327951hypothetical protein
LOC_Os05g24880Os.15265.1.A1_at10/115+14329824..14335860oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed
LOC_Os05g24890OsAffx.26994.1.S1_at3/115+14336324..14338283pentatricopeptide, putative, expressed
LOC_Os05g24900Os.49724.1.A1_at11/115+14339661..14341714expressed protein
LOC_Os05g24910Os.27639.1.S1_x_at3/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24910Os.53731.1.S1_at1/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24920OsAffx.8980.1.S1_at1/115+14348794..14349519transposon protein, putative, unclassified
LOC_Os05g24930OsAffx.4419.1.S1_at9/115+14350302..14354320pentatricopeptide, putative, expressed
LOC_Os05g24940OsAffx.14817.1.S1_at9/115+14354509..14355449hypothetical protein
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified
LOC_Os05g24960NANA5+14362435..14364929retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49724.1.A1_at--662--7811Chr05:14340016..14340040 (25 bp)
GGTCTTCGACATCATCGATCCCAGA
LOC_Os05g24900
Os.49724.1.A1_at--432--9391Chr05:14340002..14340026 (25 bp)
TCGATCCCAGAGACATGAAGCAGCT
LOC_Os05g24900
Os.49724.1.A1_at--614--5551Chr05:14339938..14339962 (25 bp)
GAAATCTAGGGACAGCCTGCGTCGC
LOC_Os05g24900
Os.49724.1.A1_at--26--291Chr05:14339839..14339863 (25 bp)
ATAGGACCATGATCTCGTCTGTTTC
LOC_Os05g24900
Os.49724.1.A1_at--1018--7172Chr11:6585039..6585059 (21 bp)
GTCTGTTTCTGCTGTCTGTTCGATT
LOC_Os11g11870
Os.49724.1.A1_at--951--8791Chr05:14339807..14339831 (25 bp)
TGTTCGATTCTTTGGTTGCTTGTCA
LOC_Os05g24900
Os.49724.1.A1_at--707--6671Chr05:14339793..14339817 (25 bp)
GTTGCTTGTCAAGCCTGCTTTGAAC
LOC_Os05g24900
Os.49724.1.A1_at--325--4471Chr05:14339781..14339805 (25 bp)
GCCTGCTTTGAACCTTAGAAATCTG
LOC_Os05g24900
Os.49724.1.A1_at--84--5431Chr05:14339739..14339763 (25 bp)
GAAGCCATTGATTTATTTGCAGCCA
LOC_Os05g24900
Os.49724.1.A1_at--367--10271Chr05:14339724..14339748 (25 bp)
TTTGCAGCCAACTTGTGCTGGCAGT
LOC_Os05g24900
Os.49724.1.A1_at--1054--8251Chr05:14339705..14339729 (25 bp)
GGCAGTAGCCCCATCATATGTATAC
LOC_Os05g24900
Target Sequence 
GGTCTTCGACATCATCGATCCCAGAGACATGAAGCAGCTGGGGATCTCCGGCGAGGCGCAGTACATTGTCAGCCCGGTGA
AATCTAGGGACAGCCTGCGTCGCCGTGGAGGCGGCCTGCTACAGAGGCTTGGCTTCTTCCTGAAAGCAGAGTTTTGATGA
GCTAGAGCAGAGTAGGAATAGGACCATGATCTCGTCTGTTTCTGCTGTCTGTTCGATTCTTTGGTTGCTTGTCAAGCCTG
CTTTGAACCTTAGAAATCTGTTTAATGTAATTTACTTGAAGCCATTGATTTATTTGCAGCCAACTTGTGCTGGCAGTAGC
CCCATCATATGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49724.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis