Browse Element(s) Details


OsAffx.14817.1.S1_at

Description tigr:9633.m02236
TID=OsAffx.14817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g249409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24880Os.15265.1.A1_at10/115+14329824..14335860oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed
LOC_Os05g24890OsAffx.26994.1.S1_at3/115+14336324..14338283pentatricopeptide, putative, expressed
LOC_Os05g24900Os.49724.1.A1_at11/115+14339661..14341714expressed protein
LOC_Os05g24910Os.27639.1.S1_x_at3/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24910Os.53731.1.S1_at1/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24920OsAffx.8980.1.S1_at1/115+14348794..14349519transposon protein, putative, unclassified
LOC_Os05g24930OsAffx.4419.1.S1_at9/115+14350302..14354320pentatricopeptide, putative, expressed
LOC_Os05g24940OsAffx.14817.1.S1_at9/115+14354509..14355449hypothetical protein
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified
LOC_Os05g24960NANA5+14362435..14364929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24970Os.12155.1.S1_at11/115+14371563..14374099Small nuclear ribonucleoprotein Sm D2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14817.1.S1_at--684--3491Chr05:14355474..14355498 (25 bp)
CATGGAGTGATCATCGTCGAGCCGC
NONE
OsAffx.14817.1.S1_at--457--1351NONE
AGAGATGACGAGGTACACCGCCACC
NONE
OsAffx.14817.1.S1_at--73--3051Chr05:14354834..14354858 (25 bp)
AATCTACGCGACGTGGTACCCTGTG
LOC_Os05g24940
OsAffx.14817.1.S1_at--974--891Chr05:14354786..14354810 (25 bp)
AGGCGGCTTCTTCCCAAGAATGAAT
LOC_Os05g24940
OsAffx.14817.1.S1_at--845--8811Chr05:14354738..14354762 (25 bp)
TGTTGGGAAGGAGCCACTACACAAT
LOC_Os05g24940
OsAffx.14817.1.S1_at--573--2011Chr05:14354677..14354747 (25 bp)
ACTACACAATTGCTATGGCGACCCC
LOC_Os05g24940
OsAffx.14817.1.S1_at--738--3631Chr05:14354652..14354676 (25 bp)
CTTCCAGCAATAAATCACCCTAGGG
LOC_Os05g24940
OsAffx.14817.1.S1_at--1160--151Chr05:14354620..14354644 (25 bp)
ATTTATCGCCGGGAGGAGATTATCT
LOC_Os05g24940
OsAffx.14817.1.S1_at--216--10031Chr05:14354596..14354620 (25 bp)
TAGAAAATTGCCATTGCACGCCCCT
LOC_Os05g24940
OsAffx.14817.1.S1_at--348--9271Chr05:14354570..14354594 (25 bp)
TCCTGAGGTGCCACTTCACATTAAT
LOC_Os05g24940
OsAffx.14817.1.S1_at--697--9691Chr05:14354555..14354579 (25 bp)
TCACATTAATATGCTCCTTCTGTCC
LOC_Os05g24940
Target Sequence 
CATGGAGTGATCATCGTCGAGCCGCCGCTGGCTCGGTCGAGCTGCAGAGATGACGAGGTACACCGCCACCACAAAAGCCA
CAACAACAGCCACGCACAGCTGGACCCGGAGCTGTGCCAGCAGTGGGGGTGGGGGAGGGGGAAGGGGAGCGGCGCTAGCG
GTGTGGCGGAGGGGGAGCGGTGCCGATGGTGGGGGGTTGACGTAGAGGAATTTACAAAAATATATTCTCATTTCAAAGCT
TCACATAAATATATCCTCCCGCCCTACCGTAGGGCGGGGGTAGATAAATCGTCCTACGGTAGGACAATCTACGCGACGTG
GTACCCTGTGGGAGGCGGCTTCTTCCCAAGAATGAATCGCCCTAGGGGAGGGCGATTCATTGTTGGGAAGGAGCCACTAC
ACAATTGCTATGGCGACCCCCTTCCAGCAATAAATCACCCTAGGGAAGAACGATTTATCGCCGGGAGGAGATTATCTAGA
AAATTGCCATTGCACGCCCCTCTCCTGAGGTGCCACTTCACATTAATATGCTCCTTCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis